Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFRAP16234 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFRAP16234 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
PDGFRAP16234 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFRAP16234 UBE2SP1-201ENST00000450587 669 ntBASIC20.36■□□□□ 0.85
PDGFRAP16234 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFRAP16234 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.36■□□□□ 0.85
PDGFRAP16234 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.36■□□□□ 0.85
PDGFRAP16234 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.36■□□□□ 0.85
PDGFRAP16234 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
PDGFRAP16234 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.36■□□□□ 0.85
PDGFRAP16234 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.36■□□□□ 0.85
PDGFRAP16234 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFRAP16234 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.36■□□□□ 0.85
PDGFRAP16234 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.36■□□□□ 0.85
PDGFRAP16234 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFRAP16234 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.36■□□□□ 0.85
PDGFRAP16234 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFRAP16234 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
PDGFRAP16234 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFRAP16234 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
PDGFRAP16234 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
PDGFRAP16234 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFRAP16234 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.36■□□□□ 0.85
PDGFRAP16234 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
PDGFRAP16234 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
PDGFRAP16234 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
PDGFRAP16234 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDGFRAP16234 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PDGFRAP16234 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDGFRAP16234 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDGFRAP16234 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.35■□□□□ 0.85
PDGFRAP16234 AP006294.2-201ENST00000641667 209 ntBASIC20.35■□□□□ 0.85
PDGFRAP16234 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
PDGFRAP16234 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDGFRAP16234 ZNF815P-204ENST00000434898 1737 ntBASIC20.35■□□□□ 0.85
PDGFRAP16234 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.35■□□□□ 0.85
PDGFRAP16234 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDGFRAP16234 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDGFRAP16234 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.35■□□□□ 0.85
PDGFRAP16234 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.35■□□□□ 0.85
PDGFRAP16234 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDGFRAP16234 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDGFRAP16234 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDGFRAP16234 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
PDGFRAP16234 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDGFRAP16234 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDGFRAP16234 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDGFRAP16234 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
PDGFRAP16234 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.34■□□□□ 0.85
PDGFRAP16234 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PDGFRAP16234 AC133681.1-201ENST00000465482 601 ntBASIC20.34■□□□□ 0.85
PDGFRAP16234 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
PDGFRAP16234 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.34■□□□□ 0.85
PDGFRAP16234 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.34■□□□□ 0.85
PDGFRAP16234 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PDGFRAP16234 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDGFRAP16234 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDGFRAP16234 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDGFRAP16234 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.34■□□□□ 0.85
PDGFRAP16234 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDGFRAP16234 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PDGFRAP16234 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PDGFRAP16234 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDGFRAP16234 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.34■□□□□ 0.85
PDGFRAP16234 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PDGFRAP16234 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
PDGFRAP16234 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.33■□□□□ 0.85
PDGFRAP16234 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.33■□□□□ 0.85
PDGFRAP16234 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PDGFRAP16234 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PDGFRAP16234 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PDGFRAP16234 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PDGFRAP16234 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PDGFRAP16234 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
PDGFRAP16234 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PDGFRAP16234 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.33■□□□□ 0.85
PDGFRAP16234 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.33■□□□□ 0.85
PDGFRAP16234 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.33■□□□□ 0.85
PDGFRAP16234 AC110285.5-201ENST00000611501 352 ntBASIC20.33■□□□□ 0.85
PDGFRAP16234 AL032819.2-201ENST00000624543 2162 ntBASIC20.33■□□□□ 0.85
PDGFRAP16234 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.33■□□□□ 0.84
PDGFRAP16234 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.33■□□□□ 0.84
PDGFRAP16234 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PDGFRAP16234 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.33■□□□□ 0.84
PDGFRAP16234 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.33■□□□□ 0.84
PDGFRAP16234 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PDGFRAP16234 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.33■□□□□ 0.84
PDGFRAP16234 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDGFRAP16234 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PDGFRAP16234 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PDGFRAP16234 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDGFRAP16234 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDGFRAP16234 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.32■□□□□ 0.84
PDGFRAP16234 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PDGFRAP16234 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDGFRAP16234 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
PDGFRAP16234 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
PDGFRAP16234 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.32■□□□□ 0.84
PDGFRAP16234 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms