Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC024257.2-201ENST00000549699 147 ntBASIC19.46■□□□□ 0.71
VIMP08670 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.46■□□□□ 0.71
VIMP08670 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.46■□□□□ 0.71
VIMP08670 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VIMP08670 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VIMP08670 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.46■□□□□ 0.71
VIMP08670 AL031598.1-201ENST00000561511 1773 ntBASIC19.46■□□□□ 0.71
VIMP08670 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
VIMP08670 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VIMP08670 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.46■□□□□ 0.71
VIMP08670 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
VIMP08670 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VIMP08670 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VIMP08670 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.45■□□□□ 0.7
VIMP08670 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VIMP08670 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VIMP08670 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VIMP08670 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
VIMP08670 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.45■□□□□ 0.7
VIMP08670 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VIMP08670 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
VIMP08670 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VIMP08670 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
VIMP08670 PTBP1P-201ENST00000554374 1601 ntBASIC19.45■□□□□ 0.7
VIMP08670 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VIMP08670 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VIMP08670 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.45■□□□□ 0.7
VIMP08670 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.45■□□□□ 0.7
VIMP08670 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VIMP08670 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.45■□□□□ 0.7
VIMP08670 AL355001.2-201ENST00000620617 1191 ntBASIC19.45■□□□□ 0.7
VIMP08670 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VIMP08670 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VIMP08670 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
VIMP08670 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VIMP08670 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
VIMP08670 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.45■□□□□ 0.7
VIMP08670 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VIMP08670 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VIMP08670 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
VIMP08670 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VIMP08670 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
VIMP08670 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VIMP08670 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VIMP08670 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.44■□□□□ 0.7
VIMP08670 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VIMP08670 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VIMP08670 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VIMP08670 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VIMP08670 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.44■□□□□ 0.7
VIMP08670 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC19.44■□□□□ 0.7
VIMP08670 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VIMP08670 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.44■□□□□ 0.7
VIMP08670 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.44■□□□□ 0.7
VIMP08670 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VIMP08670 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VIMP08670 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VIMP08670 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.44■□□□□ 0.7
VIMP08670 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.44■□□□□ 0.7
VIMP08670 AC012414.1-201ENST00000556676 535 ntBASIC19.44■□□□□ 0.7
VIMP08670 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.44■□□□□ 0.7
VIMP08670 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.44■□□□□ 0.7
VIMP08670 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VIMP08670 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.44■□□□□ 0.7
VIMP08670 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.44■□□□□ 0.7
VIMP08670 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
VIMP08670 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VIMP08670 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.44■□□□□ 0.7
VIMP08670 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.44■□□□□ 0.7
VIMP08670 AC141586.3-201ENST00000562166 1838 ntBASIC19.44■□□□□ 0.7
VIMP08670 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
VIMP08670 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
VIMP08670 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VIMP08670 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VIMP08670 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VIMP08670 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
VIMP08670 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
VIMP08670 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VIMP08670 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VIMP08670 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VIMP08670 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VIMP08670 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.43■□□□□ 0.7
VIMP08670 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
VIMP08670 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VIMP08670 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VIMP08670 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.43■□□□□ 0.7
VIMP08670 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
VIMP08670 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.43■□□□□ 0.7
VIMP08670 AL136162.1-201ENST00000607711 1078 ntBASIC19.43■□□□□ 0.7
VIMP08670 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
VIMP08670 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VIMP08670 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VIMP08670 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VIMP08670 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VIMP08670 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VIMP08670 TEX21P-204ENST00000641479 1693 ntBASIC19.43■□□□□ 0.7
VIMP08670 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC19.43■□□□□ 0.7
VIMP08670 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VIMP08670 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.43■□□□□ 0.7
VIMP08670 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms