Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
NPHP4O75161 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC27.4■■□□□ 1.98
NPHP4O75161 AC012615.1-201ENST00000565797 1299 ntBASIC27.4■■□□□ 1.98
NPHP4O75161 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC27.4■■□□□ 1.98
NPHP4O75161 GALC-202ENST00000393568 2054 ntTSL 2 BASIC27.4■■□□□ 1.98
NPHP4O75161 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC27.4■■□□□ 1.98
NPHP4O75161 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
NPHP4O75161 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC27.39■■□□□ 1.98
NPHP4O75161 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC27.39■■□□□ 1.98
NPHP4O75161 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC27.39■■□□□ 1.98
NPHP4O75161 PLK5-205ENST00000642079 1969 ntBASIC27.39■■□□□ 1.98
NPHP4O75161 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
NPHP4O75161 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.98
NPHP4O75161 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
NPHP4O75161 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC27.39■■□□□ 1.97
NPHP4O75161 RPP21-221ENST00000428040 594 ntTSL 2 BASIC27.39■■□□□ 1.97
NPHP4O75161 PMS2P1-201ENST00000431037 1228 ntBASIC27.39■■□□□ 1.97
NPHP4O75161 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
NPHP4O75161 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC27.39■■□□□ 1.97
NPHP4O75161 AL121912.1-201ENST00000603683 238 ntBASIC27.39■■□□□ 1.97
NPHP4O75161 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC27.39■■□□□ 1.97
NPHP4O75161 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC27.39■■□□□ 1.97
NPHP4O75161 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC27.39■■□□□ 1.97
NPHP4O75161 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC27.39■■□□□ 1.97
NPHP4O75161 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC27.39■■□□□ 1.97
NPHP4O75161 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC27.38■■□□□ 1.97
NPHP4O75161 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC27.38■■□□□ 1.97
NPHP4O75161 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
NPHP4O75161 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.97
NPHP4O75161 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC27.38■■□□□ 1.97
NPHP4O75161 LINC00265-3P-201ENST00000447588 903 ntBASIC27.38■■□□□ 1.97
NPHP4O75161 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC27.38■■□□□ 1.97
NPHP4O75161 AP000867.3-201ENST00000524675 377 ntBASIC27.38■■□□□ 1.97
NPHP4O75161 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
NPHP4O75161 AL117328.2-201ENST00000624617 1940 ntBASIC27.38■■□□□ 1.97
NPHP4O75161 ERF-202ENST00000440177 2032 ntTSL 2 BASIC27.37■■□□□ 1.97
NPHP4O75161 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
NPHP4O75161 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
NPHP4O75161 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
NPHP4O75161 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC27.37■■□□□ 1.97
NPHP4O75161 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
NPHP4O75161 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC27.37■■□□□ 1.97
NPHP4O75161 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
NPHP4O75161 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC27.37■■□□□ 1.97
NPHP4O75161 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC27.37■■□□□ 1.97
NPHP4O75161 PENK-208ENST00000523051 772 ntTSL 5 BASIC27.37■■□□□ 1.97
NPHP4O75161 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC27.37■■□□□ 1.97
NPHP4O75161 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
NPHP4O75161 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
NPHP4O75161 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
NPHP4O75161 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
NPHP4O75161 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
NPHP4O75161 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC27.36■■□□□ 1.97
NPHP4O75161 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
NPHP4O75161 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
NPHP4O75161 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC27.36■■□□□ 1.97
NPHP4O75161 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
NPHP4O75161 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC27.36■■□□□ 1.97
NPHP4O75161 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC27.36■■□□□ 1.97
NPHP4O75161 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC27.36■■□□□ 1.97
NPHP4O75161 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC27.36■■□□□ 1.97
NPHP4O75161 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC27.36■■□□□ 1.97
NPHP4O75161 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
NPHP4O75161 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC27.36■■□□□ 1.97
NPHP4O75161 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC27.36■■□□□ 1.97
NPHP4O75161 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
NPHP4O75161 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC27.35■■□□□ 1.97
NPHP4O75161 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC27.35■■□□□ 1.97
NPHP4O75161 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC27.35■■□□□ 1.97
NPHP4O75161 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
NPHP4O75161 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
NPHP4O75161 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC27.35■■□□□ 1.97
NPHP4O75161 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC27.35■■□□□ 1.97
NPHP4O75161 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC27.35■■□□□ 1.97
NPHP4O75161 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
NPHP4O75161 NME4-212ENST00000621774 904 ntTSL 3 BASIC27.35■■□□□ 1.97
NPHP4O75161 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC27.35■■□□□ 1.97
NPHP4O75161 FP700111.2-201ENST00000619190 1892 ntBASIC27.35■■□□□ 1.97
NPHP4O75161 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC27.35■■□□□ 1.97
NPHP4O75161 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
NPHP4O75161 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
NPHP4O75161 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC27.35■■□□□ 1.97
NPHP4O75161 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC27.35■■□□□ 1.97
NPHP4O75161 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
NPHP4O75161 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC27.35■■□□□ 1.97
NPHP4O75161 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
NPHP4O75161 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
NPHP4O75161 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
NPHP4O75161 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
NPHP4O75161 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC27.34■■□□□ 1.97
NPHP4O75161 KRT16P4-201ENST00000453883 522 ntBASIC27.34■■□□□ 1.97
NPHP4O75161 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
NPHP4O75161 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC27.34■■□□□ 1.97
NPHP4O75161 AC079602.3-201ENST00000623931 403 ntBASIC27.34■■□□□ 1.97
NPHP4O75161 VPS51-217ENST00000639871 243 ntTSL 5 BASIC27.34■■□□□ 1.97
NPHP4O75161 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC27.34■■□□□ 1.97
NPHP4O75161 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
NPHP4O75161 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
NPHP4O75161 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC27.33■■□□□ 1.97
NPHP4O75161 TOB2P1-201ENST00000469761 992 ntBASIC27.33■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms