Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
UPK1AO00322 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.39■□□□□ 0.53
UPK1AO00322 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
UPK1AO00322 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.39■□□□□ 0.53
UPK1AO00322 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.39■□□□□ 0.53
UPK1AO00322 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.39■□□□□ 0.53
UPK1AO00322 AC120498.8-201ENST00000614275 531 ntBASIC18.39■□□□□ 0.53
UPK1AO00322 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UPK1AO00322 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
UPK1AO00322 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.39■□□□□ 0.53
UPK1AO00322 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UPK1AO00322 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.39■□□□□ 0.53
UPK1AO00322 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UPK1AO00322 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UPK1AO00322 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
UPK1AO00322 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.39■□□□□ 0.53
UPK1AO00322 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
UPK1AO00322 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.39■□□□□ 0.53
UPK1AO00322 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
UPK1AO00322 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
UPK1AO00322 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UPK1AO00322 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
UPK1AO00322 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
UPK1AO00322 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
UPK1AO00322 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
UPK1AO00322 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
UPK1AO00322 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
UPK1AO00322 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
UPK1AO00322 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
UPK1AO00322 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.38■□□□□ 0.53
UPK1AO00322 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
UPK1AO00322 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
UPK1AO00322 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
UPK1AO00322 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
UPK1AO00322 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
UPK1AO00322 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
UPK1AO00322 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
UPK1AO00322 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.38■□□□□ 0.53
UPK1AO00322 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
UPK1AO00322 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
UPK1AO00322 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.38■□□□□ 0.53
UPK1AO00322 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
UPK1AO00322 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
UPK1AO00322 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
UPK1AO00322 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.37■□□□□ 0.53
UPK1AO00322 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPK1AO00322 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
UPK1AO00322 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPK1AO00322 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPK1AO00322 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.37■□□□□ 0.53
UPK1AO00322 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.37■□□□□ 0.53
UPK1AO00322 UNC93B4-201ENST00000505679 747 ntBASIC18.37■□□□□ 0.53
UPK1AO00322 UNC93B5-201ENST00000530315 699 ntBASIC18.37■□□□□ 0.53
UPK1AO00322 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.37■□□□□ 0.53
UPK1AO00322 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPK1AO00322 AC008687.6-201ENST00000596318 630 ntBASIC18.37■□□□□ 0.53
UPK1AO00322 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.37■□□□□ 0.53
UPK1AO00322 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPK1AO00322 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
UPK1AO00322 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
UPK1AO00322 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPK1AO00322 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
UPK1AO00322 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
UPK1AO00322 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
UPK1AO00322 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPK1AO00322 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPK1AO00322 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UPK1AO00322 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.37■□□□□ 0.53
UPK1AO00322 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
UPK1AO00322 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
UPK1AO00322 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
UPK1AO00322 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
UPK1AO00322 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
UPK1AO00322 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
UPK1AO00322 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.36■□□□□ 0.53
UPK1AO00322 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.36■□□□□ 0.53
UPK1AO00322 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.36■□□□□ 0.53
UPK1AO00322 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
UPK1AO00322 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
UPK1AO00322 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.36■□□□□ 0.53
UPK1AO00322 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.36■□□□□ 0.53
UPK1AO00322 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms