Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC188H7C350 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC188H7C350 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC188H7C350 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC188H7C350 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC188H7C350 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC188H7C350 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC188H7C350 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.16■□□□□ 0.82
CCDC188H7C350 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC188H7C350 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC188H7C350 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC188H7C350 AC137761.2-201ENST00000561729 223 ntBASIC20.16■□□□□ 0.82
CCDC188H7C350 AC145350.3-201ENST00000569033 163 ntBASIC20.16■□□□□ 0.82
CCDC188H7C350 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CCDC188H7C350 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC188H7C350 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC188H7C350 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC188H7C350 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CCDC188H7C350 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CCDC188H7C350 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC188H7C350 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC188H7C350 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC188H7C350 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.16■□□□□ 0.82
CCDC188H7C350 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC188H7C350 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC188H7C350 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.15■□□□□ 0.82
CCDC188H7C350 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC188H7C350 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC188H7C350 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CCDC188H7C350 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC188H7C350 AC034268.1-201ENST00000441047 882 ntBASIC20.15■□□□□ 0.82
CCDC188H7C350 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.15■□□□□ 0.82
CCDC188H7C350 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.15■□□□□ 0.82
CCDC188H7C350 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC188H7C350 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.15■□□□□ 0.82
CCDC188H7C350 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC188H7C350 AC010980.2-201ENST00000587099 1412 ntBASIC20.15■□□□□ 0.82
CCDC188H7C350 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC188H7C350 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC188H7C350 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.15■□□□□ 0.82
CCDC188H7C350 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.15■□□□□ 0.82
CCDC188H7C350 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC188H7C350 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC188H7C350 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC188H7C350 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC188H7C350 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC188H7C350 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
CCDC188H7C350 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
CCDC188H7C350 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
CCDC188H7C350 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CCDC188H7C350 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
CCDC188H7C350 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC188H7C350 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.14■□□□□ 0.81
CCDC188H7C350 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
CCDC188H7C350 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC188H7C350 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.14■□□□□ 0.81
CCDC188H7C350 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
CCDC188H7C350 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC188H7C350 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC188H7C350 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.14■□□□□ 0.81
CCDC188H7C350 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CCDC188H7C350 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC188H7C350 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC188H7C350 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CCDC188H7C350 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC188H7C350 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.14■□□□□ 0.81
CCDC188H7C350 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.14■□□□□ 0.81
CCDC188H7C350 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC188H7C350 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC188H7C350 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC188H7C350 FP475955.4-201ENST00000623131 1990 ntBASIC20.14■□□□□ 0.81
CCDC188H7C350 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC188H7C350 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC188H7C350 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC188H7C350 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20.13■□□□□ 0.81
CCDC188H7C350 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.13■□□□□ 0.81
CCDC188H7C350 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
CCDC188H7C350 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC188H7C350 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC188H7C350 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC188H7C350 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC188H7C350 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC188H7C350 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CCDC188H7C350 ZNRF2P3-201ENST00000424200 374 ntBASIC20.13■□□□□ 0.81
CCDC188H7C350 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC188H7C350 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC188H7C350 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC188H7C350 OR10C1-204ENST00000622521 1039 ntBASIC20.13■□□□□ 0.81
CCDC188H7C350 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CCDC188H7C350 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC188H7C350 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC188H7C350 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CCDC188H7C350 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC188H7C350 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC188H7C350 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC188H7C350 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC188H7C350 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC188H7C350 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC188H7C350 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC188H7C350 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms