Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LRRC53A6NM62 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LRRC53A6NM62 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.89■□□□□ 0.93
LRRC53A6NM62 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.89■□□□□ 0.93
LRRC53A6NM62 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LRRC53A6NM62 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
LRRC53A6NM62 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LRRC53A6NM62 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LRRC53A6NM62 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LRRC53A6NM62 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.89■□□□□ 0.93
LRRC53A6NM62 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LRRC53A6NM62 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
LRRC53A6NM62 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
LRRC53A6NM62 AP006587.1-201ENST00000534129 1502 ntBASIC20.88■□□□□ 0.93
LRRC53A6NM62 AL138781.2-201ENST00000617896 1843 ntBASIC20.88■□□□□ 0.93
LRRC53A6NM62 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC53A6NM62 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC53A6NM62 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC53A6NM62 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC53A6NM62 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC53A6NM62 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC53A6NM62 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC53A6NM62 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.88■□□□□ 0.93
LRRC53A6NM62 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.88■□□□□ 0.93
LRRC53A6NM62 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC53A6NM62 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.88■□□□□ 0.93
LRRC53A6NM62 HLA-B-256ENST00000639848 1089 ntBASIC20.88■□□□□ 0.93
LRRC53A6NM62 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.88■□□□□ 0.93
LRRC53A6NM62 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
LRRC53A6NM62 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC53A6NM62 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC20.88■□□□□ 0.93
LRRC53A6NM62 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.88■□□□□ 0.93
LRRC53A6NM62 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC53A6NM62 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
LRRC53A6NM62 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC53A6NM62 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LRRC53A6NM62 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC53A6NM62 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC53A6NM62 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC53A6NM62 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
LRRC53A6NM62 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC53A6NM62 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC53A6NM62 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.87■□□□□ 0.93
LRRC53A6NM62 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
LRRC53A6NM62 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.87■□□□□ 0.93
LRRC53A6NM62 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.87■□□□□ 0.93
LRRC53A6NM62 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.87■□□□□ 0.93
LRRC53A6NM62 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.87■□□□□ 0.93
LRRC53A6NM62 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.87■□□□□ 0.93
LRRC53A6NM62 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.87■□□□□ 0.93
LRRC53A6NM62 AC098934.4-201ENST00000564127 592 ntBASIC20.87■□□□□ 0.93
LRRC53A6NM62 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.87■□□□□ 0.93
LRRC53A6NM62 MIR4758-201ENST00000577688 71 ntBASIC20.87■□□□□ 0.93
LRRC53A6NM62 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC53A6NM62 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.87■□□□□ 0.93
LRRC53A6NM62 AL121906.2-201ENST00000621597 723 ntBASIC20.87■□□□□ 0.93
LRRC53A6NM62 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC53A6NM62 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.87■□□□□ 0.93
LRRC53A6NM62 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
LRRC53A6NM62 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC53A6NM62 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC53A6NM62 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
LRRC53A6NM62 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC53A6NM62 NEFHP1-201ENST00000412845 2629 ntBASIC20.87■□□□□ 0.93
LRRC53A6NM62 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LRRC53A6NM62 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
LRRC53A6NM62 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC53A6NM62 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC53A6NM62 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
LRRC53A6NM62 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC53A6NM62 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC53A6NM62 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC53A6NM62 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.86■□□□□ 0.93
LRRC53A6NM62 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC53A6NM62 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC53A6NM62 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC53A6NM62 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.86■□□□□ 0.93
LRRC53A6NM62 YBX1P10-201ENST00000444752 975 ntBASIC20.86■□□□□ 0.93
LRRC53A6NM62 AC097658.1-201ENST00000475555 843 ntBASIC20.86■□□□□ 0.93
LRRC53A6NM62 PNMA6B-201ENST00000538162 1200 ntBASIC20.86■□□□□ 0.93
LRRC53A6NM62 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.86■□□□□ 0.93
LRRC53A6NM62 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.86■□□□□ 0.93
LRRC53A6NM62 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.86■□□□□ 0.93
LRRC53A6NM62 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC53A6NM62 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC53A6NM62 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC53A6NM62 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC53A6NM62 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.86■□□□□ 0.93
LRRC53A6NM62 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.86■□□□□ 0.93
LRRC53A6NM62 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.86■□□□□ 0.93
LRRC53A6NM62 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LRRC53A6NM62 KRT8P8-201ENST00000434750 1448 ntBASIC20.86■□□□□ 0.93
LRRC53A6NM62 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC53A6NM62 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC53A6NM62 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC53A6NM62 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.85■□□□□ 0.93
LRRC53A6NM62 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.85■□□□□ 0.93
LRRC53A6NM62 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.85■□□□□ 0.93
LRRC53A6NM62 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC53A6NM62 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms