Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 ABHD17AP6-201ENST00000458502 1044 ntBASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 REXO2-208ENST00000539754 791 ntTSL 2 BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 AL121906.2-201ENST00000621597 723 ntBASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 AC133041.1-202ENST00000642053 222 ntBASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
TRAV4A0A0B4J268 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 RPS2P52-201ENST00000469610 820 ntBASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 PNMA6B-201ENST00000538162 1200 ntBASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRAV4A0A0B4J268 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 AC093484.2-201ENST00000580996 2166 ntBASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 OR2A1-AS1-207ENST00000486094 819 ntBASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 AC005332.7-201ENST00000614046 2005 ntBASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRAV4A0A0B4J268 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
TRAV4A0A0B4J268 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
TRAV4A0A0B4J268 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
TRAV4A0A0B4J268 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
TRAV4A0A0B4J268 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
TRAV4A0A0B4J268 AC018445.3-201ENST00000624177 1945 ntBASIC13.96□□□□□ -0.18
TRAV4A0A0B4J268 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC13.95□□□□□ -0.18
TRAV4A0A0B4J268 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms