Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.45□□□□□ -1.54
NEK3P51956 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
NEK3P51956 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC5.45□□□□□ -1.54
NEK3P51956 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
NEK3P51956 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
NEK3P51956 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC5.45□□□□□ -1.54
NEK3P51956 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
NEK3P51956 RNU6-839P-201ENST00000363347 108 ntBASIC5.45□□□□□ -1.54
NEK3P51956 RNU4-92P-201ENST00000363783 136 ntBASIC5.45□□□□□ -1.54
NEK3P51956 RNU6-707P-201ENST00000364647 95 ntBASIC5.45□□□□□ -1.54
NEK3P51956 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC5.45□□□□□ -1.54
NEK3P51956 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
NEK3P51956 SNORA67-201ENST00000384423 137 ntBASIC5.45□□□□□ -1.54
NEK3P51956 MIR105-2-201ENST00000385083 81 ntBASIC5.45□□□□□ -1.54
NEK3P51956 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
NEK3P51956 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.45□□□□□ -1.54
NEK3P51956 RNA5SP487-201ENST00000410186 122 ntBASIC5.45□□□□□ -1.54
NEK3P51956 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.45□□□□□ -1.54
NEK3P51956 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC5.45□□□□□ -1.54
NEK3P51956 AC233981.1-201ENST00000423224 461 ntBASIC5.45□□□□□ -1.54
NEK3P51956 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC5.45□□□□□ -1.54
NEK3P51956 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC5.45□□□□□ -1.54
NEK3P51956 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.45□□□□□ -1.54
NEK3P51956 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC5.45□□□□□ -1.54
NEK3P51956 RNF148-202ENST00000447240 839 ntTSL 2 BASIC5.45□□□□□ -1.54
NEK3P51956 RPL23AP15-201ENST00000450202 459 ntBASIC5.45□□□□□ -1.54
NEK3P51956 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
NEK3P51956 RPL15P21-201ENST00000495592 567 ntBASIC5.45□□□□□ -1.54
NEK3P51956 MYL12BP2-201ENST00000503948 512 ntBASIC5.45□□□□□ -1.54
NEK3P51956 AC020699.1-201ENST00000505161 445 ntBASIC5.45□□□□□ -1.54
NEK3P51956 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.45□□□□□ -1.54
NEK3P51956 AC109464.1-201ENST00000511091 819 ntBASIC5.45□□□□□ -1.54
NEK3P51956 RNA5SP92-201ENST00000516437 110 ntBASIC5.45□□□□□ -1.54
NEK3P51956 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.45□□□□□ -1.54
NEK3P51956 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC5.45□□□□□ -1.54
NEK3P51956 AP001207.1-201ENST00000524051 481 ntBASIC5.45□□□□□ -1.54
NEK3P51956 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC5.45□□□□□ -1.54
NEK3P51956 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC5.45□□□□□ -1.54
NEK3P51956 AC063949.1-201ENST00000552900 865 ntBASIC5.45□□□□□ -1.54
NEK3P51956 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.45□□□□□ -1.54
NEK3P51956 AC090515.3-201ENST00000560431 315 ntBASIC5.45□□□□□ -1.54
NEK3P51956 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.45□□□□□ -1.54
NEK3P51956 AGGF1P5-201ENST00000567900 919 ntBASIC5.45□□□□□ -1.54
NEK3P51956 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
NEK3P51956 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC5.45□□□□□ -1.54
NEK3P51956 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.45□□□□□ -1.54
NEK3P51956 AP003973.1-201ENST00000604639 691 ntBASIC5.45□□□□□ -1.54
NEK3P51956 AL450336.1-201ENST00000605180 586 ntBASIC5.45□□□□□ -1.54
NEK3P51956 AC016877.3-201ENST00000606778 504 ntBASIC5.45□□□□□ -1.54
NEK3P51956 AL445423.1-201ENST00000609941 536 ntBASIC5.45□□□□□ -1.54
NEK3P51956 AC063944.3-201ENST00000609969 533 ntBASIC5.45□□□□□ -1.54
NEK3P51956 BX323046.1-201ENST00000610145 535 ntBASIC5.45□□□□□ -1.54
NEK3P51956 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC5.45□□□□□ -1.54
NEK3P51956 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
NEK3P51956 SAMMSON-227ENST00000642114 1199 ntBASIC5.45□□□□□ -1.54
NEK3P51956 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
NEK3P51956 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
NEK3P51956 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC5.45□□□□□ -1.54
NEK3P51956 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.45□□□□□ -1.54
NEK3P51956 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
NEK3P51956 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
NEK3P51956 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC5.45□□□□□ -1.54
NEK3P51956 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
NEK3P51956 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
NEK3P51956 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
NEK3P51956 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
NEK3P51956 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
NEK3P51956 AC022893.2-201ENST00000564832 3296 ntBASIC5.44□□□□□ -1.54
NEK3P51956 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
NEK3P51956 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
NEK3P51956 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
NEK3P51956 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.44□□□□□ -1.54
NEK3P51956 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
NEK3P51956 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
NEK3P51956 Y_RNA.472-201ENST00000384322 102 ntBASIC5.44□□□□□ -1.54
NEK3P51956 RNU1-149P-201ENST00000390870 161 ntBASIC5.44□□□□□ -1.54
NEK3P51956 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.44□□□□□ -1.54
NEK3P51956 CTSL3P-202ENST00000412179 788 ntBASIC5.44□□□□□ -1.54
NEK3P51956 OR51B3P-201ENST00000412287 913 ntBASIC5.44□□□□□ -1.54
NEK3P51956 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.44□□□□□ -1.54
NEK3P51956 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.44□□□□□ -1.54
NEK3P51956 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC5.44□□□□□ -1.54
NEK3P51956 AC108075.1-201ENST00000424692 529 ntBASIC5.44□□□□□ -1.54
NEK3P51956 DPRXP1-201ENST00000426312 460 ntBASIC5.44□□□□□ -1.54
NEK3P51956 AL139148.1-201ENST00000427122 680 ntBASIC5.44□□□□□ -1.54
NEK3P51956 BRWD1P3-201ENST00000428816 390 ntBASIC5.44□□□□□ -1.54
NEK3P51956 MTCO1P54-201ENST00000430139 712 ntBASIC5.44□□□□□ -1.54
NEK3P51956 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.44□□□□□ -1.54
NEK3P51956 LYPLA1P1-201ENST00000434514 622 ntBASIC5.44□□□□□ -1.54
NEK3P51956 HSD52-202ENST00000436225 772 ntTSL 3 BASIC5.44□□□□□ -1.54
NEK3P51956 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC5.44□□□□□ -1.54
NEK3P51956 GEMIN8P3-201ENST00000445417 720 ntBASIC5.44□□□□□ -1.54
NEK3P51956 GAPDHP25-201ENST00000447061 1001 ntBASIC5.44□□□□□ -1.54
NEK3P51956 FAR2P1-206ENST00000449736 709 ntBASIC5.44□□□□□ -1.54
NEK3P51956 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
NEK3P51956 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.44□□□□□ -1.54
NEK3P51956 HMGN3P1-201ENST00000453847 193 ntBASIC5.44□□□□□ -1.54
NEK3P51956 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.44□□□□□ -1.54
NEK3P51956 AC090114.3-201ENST00000479267 829 ntBASIC5.44□□□□□ -1.54
NEK3P51956 AC079841.1-201ENST00000481228 950 ntBASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms