RNA–Protein interactions for RNA: ENST00000453847.2

HMGN3P1-201, Transcript of high mobility group nucleosomal binding domain 3 pseudogene 1, humanhuman

BASIC

Gene HMGN3P1, Length 193 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3P1-201ENST00000453847 CHIC1Q5VXU3 224 aa15.92■□□□□ 0.14
HMGN3P1-201ENST00000453847 AEBP2Q6ZN18 517 aaPredicted RBP15.82■□□□□ 0.12
HMGN3P1-201ENST00000453847 PHF23Q9BUL5 403 aaPredicted RBP14.19□□□□□ -0.14
HMGN3P1-201ENST00000453847 PLPPR3Q6T4P5 718 aa13.12□□□□□ -0.31
HMGN3P1-201ENST00000453847 SENP3Q9H4L4 574 aaPredicted RBP13.12□□□□□ -0.31
HMGN3P1-201ENST00000453847 ADRA2BP18089 450 aa12.45□□□□□ -0.42
HMGN3P1-201ENST00000453847 PPP6R1Q9UPN7 881 aa12.33□□□□□ -0.44
HMGN3P1-201ENST00000453847 FOXD1Q16676 465 aa12.23□□□□□ -0.45
HMGN3P1-201ENST00000453847 KCNA4P22459 653 aa12.18□□□□□ -0.46
HMGN3P1-201ENST00000453847 EHMT2Q96KQ7 1210 aa12.01□□□□□ -0.49
HMGN3P1-201ENST00000453847 PPP4R3CPQ6ZMV5 832 aa11.7□□□□□ -0.54
HMGN3P1-201ENST00000453847 CSRNP3Q8WYN3 585 aa11.68□□□□□ -0.54
HMGN3P1-201ENST00000453847 SLC4A1APQ9BWU0 796 aaKnown RBP11.62□□□□□ -0.55
HMGN3P1-201ENST00000453847 PIAS4Q8N2W9 510 aaPredicted RBP11.58□□□□□ -0.56
HMGN3P1-201ENST00000453847 NCBP3Q53F19 620 aaKnown RBP11.45□□□□□ -0.58
HMGN3P1-201ENST00000453847 NPM3O75607 178 aaKnown RBP11.44□□□□□ -0.58
HMGN3P1-201ENST00000453847 ZBTB22O15209 634 aa11.29□□□□□ -0.6
HMGN3P1-201ENST00000453847 CNKSR2Q8WXI2 1034 aa11.19□□□□□ -0.62
HMGN3P1-201ENST00000453847 SCAF1Q9H7N4 1312 aaKnown RBP11.04□□□□□ -0.64
HMGN3P1-201ENST00000453847 MAPK8IP2Q13387 824 aaPredicted RBP11.02□□□□□ -0.65
HMGN3P1-201ENST00000453847 DNAJC5BQ9UF47 199 aa11□□□□□ -0.65
HMGN3P1-201ENST00000453847 FOXD4L1Q9NU39 408 aa10.94□□□□□ -0.66
HMGN3P1-201ENST00000453847 MSH5O43196 834 aa10.89□□□□□ -0.67
HMGN3P1-201ENST00000453847 RNF216Q9NWF9 866 aaPredicted RBP10.84□□□□□ -0.67
HMGN3P1-201ENST00000453847 SLC4A2P04920 1241 aa10.71□□□□□ -0.69
HMGN3P1-201ENST00000453847 HOXD11P31277 338 aaPredicted RBP10.67□□□□□ -0.7
HMGN3P1-201ENST00000453847 RTN4Q9NQC3 1192 aaKnown RBP10.65□□□□□ -0.7
HMGN3P1-201ENST00000453847 DMRT2Q9Y5R5 561 aa10.64□□□□□ -0.71
HMGN3P1-201ENST00000453847 SLC24A1O60721 1099 aa10.51□□□□□ -0.73
HMGN3P1-201ENST00000453847 AMER1Q5JTC6 1135 aaPredicted RBP10.51□□□□□ -0.73
HMGN3P1-201ENST00000453847 ATXN8OSP0DMR3 200 aa10.49□□□□□ -0.73
HMGN3P1-201ENST00000453847 MYCNP04198 464 aaPredicted RBP10.45□□□□□ -0.74
HMGN3P1-201ENST00000453847 FKBP8Q14318 412 aa10.43□□□□□ -0.74
HMGN3P1-201ENST00000453847 ATF5Q9Y2D1 282 aaPredicted RBP10.31□□□□□ -0.76
HMGN3P1-201ENST00000453847 U3KPZ7 1027 aaPredicted RBP10.09□□□□□ -0.79
HMGN3P1-201ENST00000453847 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.08□□□□□ -0.8
HMGN3P1-201ENST00000453847 DCAF8L1A6NGE4 600 aa10.05□□□□□ -0.8
HMGN3P1-201ENST00000453847 SAMD1Q6SPF0 538 aaPredicted RBP10.02□□□□□ -0.81
HMGN3P1-201ENST00000453847 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.98□□□□□ -0.81
HMGN3P1-201ENST00000453847 HNRNPUL2Q1KMD3 747 aaKnown RBP9.98□□□□□ -0.81
HMGN3P1-201ENST00000453847 ZNF219Q9P2Y4 722 aaPredicted RBP9.95□□□□□ -0.82
HMGN3P1-201ENST00000453847 MKRN4PQ13434 485 aaPredicted RBP9.87□□□□□ -0.83
HMGN3P1-201ENST00000453847 PROM2Q8N271 834 aa9.84□□□□□ -0.83
HMGN3P1-201ENST00000453847 SPDYE4A6NLX3 237 aa9.82□□□□□ -0.84
HMGN3P1-201ENST00000453847 FBXO3Q9UK99 471 aa9.78□□□□□ -0.84
HMGN3P1-201ENST00000453847 PLCB2Q00722 1185 aa9.75□□□□□ -0.85
HMGN3P1-201ENST00000453847 VASPP50552 380 aaPredicted RBP9.73□□□□□ -0.85
HMGN3P1-201ENST00000453847 IFNLR1Q8IU57 520 aaPredicted RBP9.72□□□□□ -0.85
HMGN3P1-201ENST00000453847 APLP2Q06481 763 aa9.68□□□□□ -0.86
HMGN3P1-201ENST00000453847 PKD2Q13563 968 aa9.65□□□□□ -0.86
HMGN3P1-201ENST00000453847 SPINK5Q9NQ38 1064 aaPredicted RBP9.65□□□□□ -0.86
HMGN3P1-201ENST00000453847 POLA2Q14181 598 aa9.61□□□□□ -0.87
HMGN3P1-201ENST00000453847 FBLN2P98095 1184 aa9.6□□□□□ -0.87
HMGN3P1-201ENST00000453847 TRHP20396 242 aaPredicted RBP9.59□□□□□ -0.87
HMGN3P1-201ENST00000453847 HAP1P54257 671 aaPredicted RBP9.56□□□□□ -0.88
HMGN3P1-201ENST00000453847 DCAF8L2P0C7V8 631 aa9.5□□□□□ -0.89
HMGN3P1-201ENST00000453847 RNF39Q9H2S5 420 aa9.49□□□□□ -0.89
HMGN3P1-201ENST00000453847 PRKCSHP14314 528 aaPredicted RBP9.48□□□□□ -0.89
HMGN3P1-201ENST00000453847 NPM1P06748 294 aaKnown RBP eCLIP9.47□□□□□ -0.89
HMGN3P1-201ENST00000453847 CAPN15O75808 1086 aa9.46□□□□□ -0.9
HMGN3P1-201ENST00000453847 VSIG10Q8N0Z9 540 aa9.45□□□□□ -0.9
HMGN3P1-201ENST00000453847 KDM2AQ9Y2K7 1162 aa9.44□□□□□ -0.9
HMGN3P1-201ENST00000453847 BCANQ96GW7 911 aa9.41□□□□□ -0.9
HMGN3P1-201ENST00000453847 ABCB7O75027 752 aa9.4□□□□□ -0.9
HMGN3P1-201ENST00000453847 SPOCK2Q92563 424 aa9.4□□□□□ -0.9
HMGN3P1-201ENST00000453847 BBXQ8WY36 941 aaPredicted RBP9.38□□□□□ -0.91
HMGN3P1-201ENST00000453847 TAOK2Q9UL54 1235 aa9.38□□□□□ -0.91
HMGN3P1-201ENST00000453847 ECM2O94769 699 aaPredicted RBP9.36□□□□□ -0.91
HMGN3P1-201ENST00000453847 KLHL34Q8N239 644 aa9.35□□□□□ -0.91
HMGN3P1-201ENST00000453847 ZBTB12Q9Y330 459 aaPredicted RBP9.35□□□□□ -0.91
HMGN3P1-201ENST00000453847 RGL2O15211 777 aa9.34□□□□□ -0.91
HMGN3P1-201ENST00000453847 C1QBPQ07021 282 aaKnown RBP9.34□□□□□ -0.91
HMGN3P1-201ENST00000453847 PAXIP1Q6ZW49 1069 aaPredicted RBP9.32□□□□□ -0.92
HMGN3P1-201ENST00000453847 ZNF692Q9BU19 519 aaPredicted RBP9.31□□□□□ -0.92
HMGN3P1-201ENST00000453847 STAG3Q9UJ98 1225 aa9.3□□□□□ -0.92
HMGN3P1-201ENST00000453847 SSUH2Q9Y2M2 353 aa9.3□□□□□ -0.92
HMGN3P1-201ENST00000453847 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.29□□□□□ -0.92
HMGN3P1-201ENST00000453847 CFAP44Q96MT7 982 aa9.28□□□□□ -0.92
HMGN3P1-201ENST00000453847 TSHZ2Q9NRE2 1034 aa9.27□□□□□ -0.93
HMGN3P1-201ENST00000453847 OSCARQ8IYS5 282 aa9.26□□□□□ -0.93
HMGN3P1-201ENST00000453847 DSG3P32926 999 aa9.25□□□□□ -0.93
HMGN3P1-201ENST00000453847 PABPN1Q86U42 306 aaKnown RBP eCLIP9.23□□□□□ -0.93
HMGN3P1-201ENST00000453847 PLCD3Q8N3E9 789 aa9.23□□□□□ -0.93
HMGN3P1-201ENST00000453847 SPDYE2BA6NHP3 402 aa9.22□□□□□ -0.93
HMGN3P1-201ENST00000453847 SPDYE6P0CI01 402 aa9.22□□□□□ -0.93
HMGN3P1-201ENST00000453847 SPDYE2Q495Y8 402 aa9.22□□□□□ -0.93
HMGN3P1-201ENST00000453847 TPRNQ4KMQ1 711 aa9.22□□□□□ -0.93
HMGN3P1-201ENST00000453847 MIER1Q8N108 512 aa9.22□□□□□ -0.93
HMGN3P1-201ENST00000453847 SPRYD3Q8NCJ5 442 aa9.21□□□□□ -0.94
HMGN3P1-201ENST00000453847 CHGAP10645 457 aaKnown RBP9.15□□□□□ -0.94
HMGN3P1-201ENST00000453847 DNAJC5Q9H3Z4 198 aa9.15□□□□□ -0.94
HMGN3P1-201ENST00000453847 CIZ1Q9ULV3 898 aaPredicted RBP9.14□□□□□ -0.95
HMGN3P1-201ENST00000453847 RNF25Q96BH1 459 aaPredicted RBP9.1□□□□□ -0.95
HMGN3P1-201ENST00000453847 HS6ST3Q8IZP7 471 aa9.07□□□□□ -0.96
HMGN3P1-201ENST00000453847 NKX1-1Q15270 411 aaPredicted RBP9.04□□□□□ -0.96
HMGN3P1-201ENST00000453847 NUBP1P53384 320 aa9.02□□□□□ -0.97
HMGN3P1-201ENST00000453847 TRIM41Q8WV44 630 aa9.02□□□□□ -0.97
HMGN3P1-201ENST00000453847 ZBTB47Q9UFB7 747 aaPredicted RBP9.02□□□□□ -0.97
HMGN3P1-201ENST00000453847 GTPBP6O43824 516 aaPredicted RBP8.98□□□□□ -0.97
HMGN3P1-201ENST00000453847 PLEKHG5O94827 1062 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms