Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 AL137784.2-201ENST00000607332 1000 ntBASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 AC018553.1-201ENST00000616682 1458 ntBASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 AC141586.3-201ENST00000562166 1838 ntBASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMARCAL1Q9NZC9 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 CYP2T1P-201ENST00000432607 1285 ntBASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.42■□□□□ 0.86
SMARCAL1Q9NZC9 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 AL133373.2-201ENST00000623187 2828 ntBASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 C2orf69P4-201ENST00000565394 541 ntBASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 KRT17P1-201ENST00000399211 1546 ntBASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 FP475955.4-201ENST00000623131 1990 ntBASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCAL1Q9NZC9 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SMARCAL1Q9NZC9 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms