Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 BMP1-204ENST00000397814 836 ntTSL 4 BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 CYP21A1P-202ENST00000354927 1481 ntBASIC17.74■□□□□ 0.43
DDX28Q9NUL7 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 ME3-201ENST00000323418 1068 ntTSL 5 BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.73■□□□□ 0.43
DDX28Q9NUL7 AC106820.2-201ENST00000563775 3264 ntBASIC17.73■□□□□ 0.43
DDX28Q9NUL7 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 CNN2P6-201ENST00000439038 900 ntBASIC17.72■□□□□ 0.43
DDX28Q9NUL7 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 DUX4L16-201ENST00000555130 1264 ntBASIC17.72■□□□□ 0.43
DDX28Q9NUL7 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 AC016405.3-201ENST00000607710 860 ntBASIC17.72■□□□□ 0.43
DDX28Q9NUL7 AL356652.1-201ENST00000615962 565 ntBASIC17.72■□□□□ 0.43
DDX28Q9NUL7 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
DDX28Q9NUL7 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
DDX28Q9NUL7 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms