Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLHC1Q8NHS4 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.63■□□□□ 0.57
CLHC1Q8NHS4 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.63■□□□□ 0.57
CLHC1Q8NHS4 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLHC1Q8NHS4 AC093503.3-201ENST00000624917 2352 ntBASIC18.63■□□□□ 0.57
CLHC1Q8NHS4 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLHC1Q8NHS4 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLHC1Q8NHS4 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLHC1Q8NHS4 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLHC1Q8NHS4 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLHC1Q8NHS4 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLHC1Q8NHS4 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLHC1Q8NHS4 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.63■□□□□ 0.57
CLHC1Q8NHS4 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLHC1Q8NHS4 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLHC1Q8NHS4 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLHC1Q8NHS4 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLHC1Q8NHS4 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLHC1Q8NHS4 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.62■□□□□ 0.57
CLHC1Q8NHS4 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLHC1Q8NHS4 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLHC1Q8NHS4 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
CLHC1Q8NHS4 AC098934.4-201ENST00000564127 592 ntBASIC18.62■□□□□ 0.57
CLHC1Q8NHS4 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.62■□□□□ 0.57
CLHC1Q8NHS4 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CLHC1Q8NHS4 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLHC1Q8NHS4 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLHC1Q8NHS4 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLHC1Q8NHS4 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLHC1Q8NHS4 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLHC1Q8NHS4 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLHC1Q8NHS4 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 LINC01465-201ENST00000408887 1940 ntBASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 TSPY6P-201ENST00000448518 926 ntBASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 RPS2P52-201ENST00000469610 820 ntBASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.61■□□□□ 0.57
CLHC1Q8NHS4 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 AC073210.2-201ENST00000430369 194 ntBASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 NCF1B-203ENST00000435988 1254 ntBASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
CLHC1Q8NHS4 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLHC1Q8NHS4 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms