Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC16.72■□□□□ 0.27
ABCA4P78363 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ABCA4P78363 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC16.72■□□□□ 0.27
ABCA4P78363 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ABCA4P78363 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ABCA4P78363 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
ABCA4P78363 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC16.72■□□□□ 0.27
ABCA4P78363 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
ABCA4P78363 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ABCA4P78363 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
ABCA4P78363 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
ABCA4P78363 TSPY5P-201ENST00000426936 936 ntBASIC16.72■□□□□ 0.27
ABCA4P78363 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ABCA4P78363 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ABCA4P78363 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
ABCA4P78363 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ABCA4P78363 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ABCA4P78363 KRT8P8-201ENST00000434750 1448 ntBASIC16.71■□□□□ 0.27
ABCA4P78363 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
ABCA4P78363 TSPY17P-201ENST00000450329 467 ntBASIC16.71■□□□□ 0.27
ABCA4P78363 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.71■□□□□ 0.27
ABCA4P78363 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.71■□□□□ 0.27
ABCA4P78363 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC16.71■□□□□ 0.27
ABCA4P78363 MOK-225ENST00000522867 1883 ntTSL 5 BASIC16.71■□□□□ 0.27
ABCA4P78363 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
ABCA4P78363 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ABCA4P78363 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ABCA4P78363 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ABCA4P78363 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.27
ABCA4P78363 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ABCA4P78363 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
ABCA4P78363 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
ABCA4P78363 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
ABCA4P78363 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ABCA4P78363 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ABCA4P78363 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
ABCA4P78363 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.71■□□□□ 0.27
ABCA4P78363 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ABCA4P78363 AL121956.5-201ENST00000625261 221 ntBASIC16.71■□□□□ 0.27
ABCA4P78363 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
ABCA4P78363 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ABCA4P78363 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ABCA4P78363 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.7■□□□□ 0.26
ABCA4P78363 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ABCA4P78363 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.7■□□□□ 0.26
ABCA4P78363 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC16.7■□□□□ 0.26
ABCA4P78363 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
ABCA4P78363 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.7■□□□□ 0.26
ABCA4P78363 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ABCA4P78363 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ABCA4P78363 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ABCA4P78363 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
ABCA4P78363 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ABCA4P78363 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC16.7■□□□□ 0.26
ABCA4P78363 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ABCA4P78363 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.7■□□□□ 0.26
ABCA4P78363 CCR12P-201ENST00000446203 998 ntBASIC16.7■□□□□ 0.26
ABCA4P78363 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.7■□□□□ 0.26
ABCA4P78363 COX11P1-201ENST00000489116 835 ntBASIC16.7■□□□□ 0.26
ABCA4P78363 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.7■□□□□ 0.26
ABCA4P78363 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ABCA4P78363 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.7■□□□□ 0.26
ABCA4P78363 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC16.7■□□□□ 0.26
ABCA4P78363 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ABCA4P78363 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC16.69■□□□□ 0.26
ABCA4P78363 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ABCA4P78363 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
ABCA4P78363 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ABCA4P78363 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
ABCA4P78363 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ABCA4P78363 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
ABCA4P78363 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC16.69■□□□□ 0.26
ABCA4P78363 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ABCA4P78363 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
ABCA4P78363 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ABCA4P78363 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ABCA4P78363 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ABCA4P78363 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC16.69■□□□□ 0.26
ABCA4P78363 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ABCA4P78363 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
ABCA4P78363 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.69■□□□□ 0.26
ABCA4P78363 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC16.69■□□□□ 0.26
ABCA4P78363 AC092647.4-201ENST00000457211 535 ntBASIC16.69■□□□□ 0.26
ABCA4P78363 AC128688.1-201ENST00000487626 519 ntBASIC16.69■□□□□ 0.26
ABCA4P78363 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ABCA4P78363 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC16.69■□□□□ 0.26
ABCA4P78363 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
ABCA4P78363 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ABCA4P78363 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
ABCA4P78363 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
ABCA4P78363 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
ABCA4P78363 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
ABCA4P78363 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
ABCA4P78363 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
ABCA4P78363 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.68■□□□□ 0.26
ABCA4P78363 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms