Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.02■□□□□ 0.64
SHMT2P34897 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.02■□□□□ 0.64
SHMT2P34897 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.02■□□□□ 0.64
SHMT2P34897 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.02■□□□□ 0.64
SHMT2P34897 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SHMT2P34897 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHMT2P34897 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHMT2P34897 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHMT2P34897 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
SHMT2P34897 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SHMT2P34897 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.02■□□□□ 0.63
SHMT2P34897 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
SHMT2P34897 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SHMT2P34897 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
SHMT2P34897 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SHMT2P34897 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHMT2P34897 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHMT2P34897 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHMT2P34897 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
SHMT2P34897 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHMT2P34897 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHMT2P34897 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHMT2P34897 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.01■□□□□ 0.63
SHMT2P34897 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.01■□□□□ 0.63
SHMT2P34897 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHMT2P34897 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHMT2P34897 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHMT2P34897 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHMT2P34897 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.01■□□□□ 0.63
SHMT2P34897 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHMT2P34897 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHMT2P34897 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
SHMT2P34897 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHMT2P34897 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.01■□□□□ 0.63
SHMT2P34897 TUBB8P6-201ENST00000436895 1288 ntBASIC19.01■□□□□ 0.63
SHMT2P34897 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.01■□□□□ 0.63
SHMT2P34897 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.01■□□□□ 0.63
SHMT2P34897 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.01■□□□□ 0.63
SHMT2P34897 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
SHMT2P34897 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SHMT2P34897 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHMT2P34897 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.01■□□□□ 0.63
SHMT2P34897 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SHMT2P34897 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHMT2P34897 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHMT2P34897 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHMT2P34897 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SHMT2P34897 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.01■□□□□ 0.63
SHMT2P34897 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SHMT2P34897 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SHMT2P34897 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19■□□□□ 0.63
SHMT2P34897 TMEM179-206ENST00000616017 1645 ntBASIC19■□□□□ 0.63
SHMT2P34897 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SHMT2P34897 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19■□□□□ 0.63
SHMT2P34897 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SHMT2P34897 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19■□□□□ 0.63
SHMT2P34897 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19■□□□□ 0.63
SHMT2P34897 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19■□□□□ 0.63
SHMT2P34897 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SHMT2P34897 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19■□□□□ 0.63
SHMT2P34897 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SHMT2P34897 AL353807.1-201ENST00000427475 662 ntBASIC19■□□□□ 0.63
SHMT2P34897 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19■□□□□ 0.63
SHMT2P34897 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SHMT2P34897 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19■□□□□ 0.63
SHMT2P34897 AC093827.2-201ENST00000512654 315 ntBASIC19■□□□□ 0.63
SHMT2P34897 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19■□□□□ 0.63
SHMT2P34897 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SHMT2P34897 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19■□□□□ 0.63
SHMT2P34897 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19■□□□□ 0.63
SHMT2P34897 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SHMT2P34897 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SHMT2P34897 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19■□□□□ 0.63
SHMT2P34897 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SHMT2P34897 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
SHMT2P34897 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19■□□□□ 0.63
SHMT2P34897 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SHMT2P34897 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19■□□□□ 0.63
SHMT2P34897 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SHMT2P34897 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SHMT2P34897 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHMT2P34897 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHMT2P34897 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
SHMT2P34897 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SHMT2P34897 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHMT2P34897 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SHMT2P34897 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.99■□□□□ 0.63
SHMT2P34897 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SHMT2P34897 AC012618.2-201ENST00000428058 849 ntBASIC18.99■□□□□ 0.63
SHMT2P34897 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SHMT2P34897 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SHMT2P34897 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SHMT2P34897 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.99■□□□□ 0.63
SHMT2P34897 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.99■□□□□ 0.63
SHMT2P34897 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.99■□□□□ 0.63
SHMT2P34897 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SHMT2P34897 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.99■□□□□ 0.63
SHMT2P34897 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.99■□□□□ 0.63
SHMT2P34897 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHMT2P34897 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms