Protein–RNA interactions for Protein: P30622

CLIP1, CAP-Gly domain-containing linker protein 1, humanhuman

Predictions only

Length 1,438 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1P30622 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
CLIP1P30622 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC30.9■■■□□ 2.54
CLIP1P30622 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC30.9■■■□□ 2.54
CLIP1P30622 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC30.9■■■□□ 2.54
CLIP1P30622 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CLIP1P30622 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
CLIP1P30622 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC30.9■■■□□ 2.54
CLIP1P30622 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC30.9■■■□□ 2.54
CLIP1P30622 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC30.9■■■□□ 2.54
CLIP1P30622 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC30.9■■■□□ 2.54
CLIP1P30622 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC30.9■■■□□ 2.54
CLIP1P30622 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CLIP1P30622 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC30.9■■■□□ 2.54
CLIP1P30622 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC30.9■■■□□ 2.54
CLIP1P30622 SLC25A1P4-201ENST00000567977 778 ntBASIC30.9■■■□□ 2.54
CLIP1P30622 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC30.9■■■□□ 2.54
CLIP1P30622 GRAMD4P8-201ENST00000605465 1115 ntBASIC30.9■■■□□ 2.54
CLIP1P30622 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC30.89■■■□□ 2.54
CLIP1P30622 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
CLIP1P30622 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC30.89■■■□□ 2.54
CLIP1P30622 ZNF815P-204ENST00000434898 1737 ntBASIC30.89■■■□□ 2.54
CLIP1P30622 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC30.89■■■□□ 2.54
CLIP1P30622 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
CLIP1P30622 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC30.89■■■□□ 2.54
CLIP1P30622 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
CLIP1P30622 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC30.89■■■□□ 2.54
CLIP1P30622 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC30.89■■■□□ 2.53
CLIP1P30622 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC30.89■■■□□ 2.53
CLIP1P30622 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC30.89■■■□□ 2.53
CLIP1P30622 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC30.89■■■□□ 2.53
CLIP1P30622 RBM42-202ENST00000586618 771 ntTSL 3 BASIC30.89■■■□□ 2.53
CLIP1P30622 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC30.89■■■□□ 2.53
CLIP1P30622 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC30.89■■■□□ 2.53
CLIP1P30622 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
CLIP1P30622 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC30.89■■■□□ 2.53
CLIP1P30622 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC30.88■■■□□ 2.53
CLIP1P30622 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
CLIP1P30622 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
CLIP1P30622 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC30.88■■■□□ 2.53
CLIP1P30622 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
CLIP1P30622 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC30.88■■■□□ 2.53
CLIP1P30622 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC30.88■■■□□ 2.53
CLIP1P30622 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CLIP1P30622 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CLIP1P30622 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
CLIP1P30622 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CLIP1P30622 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC30.88■■■□□ 2.53
CLIP1P30622 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
CLIP1P30622 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC30.88■■■□□ 2.53
CLIP1P30622 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC30.88■■■□□ 2.53
CLIP1P30622 SLC25A3P1-201ENST00000443844 931 ntBASIC30.88■■■□□ 2.53
CLIP1P30622 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC30.88■■■□□ 2.53
CLIP1P30622 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CLIP1P30622 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC30.88■■■□□ 2.53
CLIP1P30622 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC30.88■■■□□ 2.53
CLIP1P30622 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC30.88■■■□□ 2.53
CLIP1P30622 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CLIP1P30622 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
CLIP1P30622 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC30.87■■■□□ 2.53
CLIP1P30622 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC30.87■■■□□ 2.53
CLIP1P30622 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
CLIP1P30622 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC30.87■■■□□ 2.53
CLIP1P30622 TREX1-205ENST00000625293 1783 ntBASIC30.87■■■□□ 2.53
CLIP1P30622 TSPY14P-201ENST00000303979 915 ntBASIC30.87■■■□□ 2.53
CLIP1P30622 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC30.87■■■□□ 2.53
CLIP1P30622 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC30.87■■■□□ 2.53
CLIP1P30622 C2orf69P3-201ENST00000565542 1120 ntBASIC30.87■■■□□ 2.53
CLIP1P30622 AL590326.2-201ENST00000625139 305 ntBASIC30.87■■■□□ 2.53
CLIP1P30622 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CLIP1P30622 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CLIP1P30622 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CLIP1P30622 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC30.86■■■□□ 2.53
CLIP1P30622 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC30.86■■■□□ 2.53
CLIP1P30622 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC30.86■■■□□ 2.53
CLIP1P30622 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CLIP1P30622 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CLIP1P30622 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC30.86■■■□□ 2.53
CLIP1P30622 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CLIP1P30622 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC30.86■■■□□ 2.53
CLIP1P30622 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC30.86■■■□□ 2.53
CLIP1P30622 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC30.86■■■□□ 2.53
CLIP1P30622 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC30.86■■■□□ 2.53
CLIP1P30622 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC30.86■■■□□ 2.53
CLIP1P30622 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC30.86■■■□□ 2.53
CLIP1P30622 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CLIP1P30622 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CLIP1P30622 KRT18P22-201ENST00000402024 1347 ntBASIC30.86■■■□□ 2.53
CLIP1P30622 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC30.85■■■□□ 2.53
CLIP1P30622 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC30.85■■■□□ 2.53
CLIP1P30622 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC30.85■■■□□ 2.53
CLIP1P30622 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CLIP1P30622 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC30.85■■■□□ 2.53
CLIP1P30622 INGX-201ENST00000359239 846 ntBASIC30.85■■■□□ 2.53
CLIP1P30622 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC30.85■■■□□ 2.53
CLIP1P30622 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC30.85■■■□□ 2.53
CLIP1P30622 NT5C-211ENST00000582170 653 ntTSL 3 BASIC30.85■■■□□ 2.53
CLIP1P30622 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC30.85■■■□□ 2.53
CLIP1P30622 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC30.85■■■□□ 2.53
CLIP1P30622 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CLIP1P30622 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC30.85■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms