Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
PTPN4P29074 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.46■□□□□ 0.71
PTPN4P29074 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTPN4P29074 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN4P29074 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN4P29074 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN4P29074 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN4P29074 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN4P29074 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
PTPN4P29074 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN4P29074 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.45■□□□□ 0.7
PTPN4P29074 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
PTPN4P29074 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN4P29074 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
PTPN4P29074 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN4P29074 AC007322.3-201ENST00000426526 701 ntBASIC19.45■□□□□ 0.7
PTPN4P29074 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.45■□□□□ 0.7
PTPN4P29074 AC098590.1-201ENST00000468126 897 ntBASIC19.45■□□□□ 0.7
PTPN4P29074 AC026366.1-201ENST00000488803 879 ntBASIC19.45■□□□□ 0.7
PTPN4P29074 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.45■□□□□ 0.7
PTPN4P29074 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.45■□□□□ 0.7
PTPN4P29074 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN4P29074 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
PTPN4P29074 AC079598.2-202ENST00000546624 1451 ntBASIC19.45■□□□□ 0.7
PTPN4P29074 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN4P29074 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN4P29074 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN4P29074 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.45■□□□□ 0.7
PTPN4P29074 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN4P29074 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN4P29074 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.45■□□□□ 0.7
PTPN4P29074 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.45■□□□□ 0.7
PTPN4P29074 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
PTPN4P29074 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN4P29074 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN4P29074 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN4P29074 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN4P29074 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN4P29074 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN4P29074 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN4P29074 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
PTPN4P29074 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN4P29074 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.44■□□□□ 0.7
PTPN4P29074 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN4P29074 AC128676.1-201ENST00000454392 318 ntBASIC19.44■□□□□ 0.7
PTPN4P29074 RPS2P52-201ENST00000469610 820 ntBASIC19.44■□□□□ 0.7
PTPN4P29074 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN4P29074 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.44■□□□□ 0.7
PTPN4P29074 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN4P29074 AP006294.2-201ENST00000641667 209 ntBASIC19.44■□□□□ 0.7
PTPN4P29074 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN4P29074 AL032819.2-201ENST00000624543 2162 ntBASIC19.44■□□□□ 0.7
PTPN4P29074 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.44■□□□□ 0.7
PTPN4P29074 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN4P29074 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN4P29074 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN4P29074 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN4P29074 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN4P29074 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
PTPN4P29074 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.44■□□□□ 0.7
PTPN4P29074 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN4P29074 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
PTPN4P29074 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN4P29074 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN4P29074 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN4P29074 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN4P29074 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN4P29074 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN4P29074 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.43■□□□□ 0.7
PTPN4P29074 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN4P29074 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.43■□□□□ 0.7
PTPN4P29074 GCSHP5-201ENST00000443090 522 ntBASIC19.43■□□□□ 0.7
PTPN4P29074 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.43■□□□□ 0.7
PTPN4P29074 AP003097.1-201ENST00000530657 1135 ntBASIC19.43■□□□□ 0.7
PTPN4P29074 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.43■□□□□ 0.7
PTPN4P29074 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.43■□□□□ 0.7
PTPN4P29074 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
PTPN4P29074 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN4P29074 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN4P29074 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN4P29074 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
PTPN4P29074 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
PTPN4P29074 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.43■□□□□ 0.7
PTPN4P29074 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN4P29074 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PTPN4P29074 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN4P29074 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
PTPN4P29074 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN4P29074 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN4P29074 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN4P29074 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
PTPN4P29074 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN4P29074 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN4P29074 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN4P29074 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN4P29074 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.42■□□□□ 0.7
PTPN4P29074 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.42■□□□□ 0.7
PTPN4P29074 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.42■□□□□ 0.7
PTPN4P29074 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PTPN4P29074 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms