Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
COL8A1P27658 AC242852.2-201ENST00000615738 1807 ntBASIC16.98■□□□□ 0.31
COL8A1P27658 AC007375.3-201ENST00000600936 2314 ntBASIC16.98■□□□□ 0.31
COL8A1P27658 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL8A1P27658 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL8A1P27658 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL8A1P27658 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL8A1P27658 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
COL8A1P27658 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL8A1P27658 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL8A1P27658 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL8A1P27658 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.98■□□□□ 0.31
COL8A1P27658 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL8A1P27658 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.98■□□□□ 0.31
COL8A1P27658 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.98■□□□□ 0.31
COL8A1P27658 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.98■□□□□ 0.31
COL8A1P27658 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.98■□□□□ 0.31
COL8A1P27658 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC16.98■□□□□ 0.31
COL8A1P27658 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC16.98■□□□□ 0.31
COL8A1P27658 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL8A1P27658 AC139530.3-201ENST00000620344 690 ntBASIC16.98■□□□□ 0.31
COL8A1P27658 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL8A1P27658 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL8A1P27658 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC16.98■□□□□ 0.31
COL8A1P27658 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
COL8A1P27658 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.98■□□□□ 0.31
COL8A1P27658 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL8A1P27658 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL8A1P27658 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL8A1P27658 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL8A1P27658 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL8A1P27658 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL8A1P27658 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL8A1P27658 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL8A1P27658 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL8A1P27658 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL8A1P27658 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL8A1P27658 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC16.97■□□□□ 0.31
COL8A1P27658 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL8A1P27658 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL8A1P27658 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL8A1P27658 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL8A1P27658 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.97■□□□□ 0.31
COL8A1P27658 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.97■□□□□ 0.31
COL8A1P27658 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL8A1P27658 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL8A1P27658 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL8A1P27658 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.97■□□□□ 0.31
COL8A1P27658 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL8A1P27658 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.97■□□□□ 0.31
COL8A1P27658 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL8A1P27658 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.97■□□□□ 0.31
COL8A1P27658 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.97■□□□□ 0.31
COL8A1P27658 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.97■□□□□ 0.31
COL8A1P27658 AL031008.1-201ENST00000619963 541 ntBASIC16.97■□□□□ 0.31
COL8A1P27658 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.97■□□□□ 0.31
COL8A1P27658 HLA-A-209ENST00000638375 975 ntBASIC16.97■□□□□ 0.31
COL8A1P27658 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL8A1P27658 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
COL8A1P27658 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL8A1P27658 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL8A1P27658 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
COL8A1P27658 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
COL8A1P27658 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC16.96■□□□□ 0.31
COL8A1P27658 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL8A1P27658 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL8A1P27658 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL8A1P27658 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC16.96■□□□□ 0.31
COL8A1P27658 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL8A1P27658 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC16.96■□□□□ 0.31
COL8A1P27658 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL8A1P27658 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC16.96■□□□□ 0.31
COL8A1P27658 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL8A1P27658 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
COL8A1P27658 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL8A1P27658 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL8A1P27658 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC16.96■□□□□ 0.31
COL8A1P27658 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.96■□□□□ 0.31
COL8A1P27658 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.96■□□□□ 0.31
COL8A1P27658 IFNL4P1-201ENST00000607083 540 ntBASIC16.96■□□□□ 0.31
COL8A1P27658 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.96■□□□□ 0.31
COL8A1P27658 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC16.96■□□□□ 0.31
COL8A1P27658 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL8A1P27658 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL8A1P27658 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
COL8A1P27658 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
COL8A1P27658 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
COL8A1P27658 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
COL8A1P27658 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC16.96■□□□□ 0.3
COL8A1P27658 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC16.96■□□□□ 0.3
COL8A1P27658 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC16.96■□□□□ 0.3
COL8A1P27658 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL8A1P27658 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL8A1P27658 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL8A1P27658 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC16.95■□□□□ 0.3
COL8A1P27658 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL8A1P27658 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL8A1P27658 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL8A1P27658 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
COL8A1P27658 DYM-203ENST00000442713 2147 ntTSL 2 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms