Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCNAP12004 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCNAP12004 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.9■□□□□ 0.62
PCNAP12004 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
PCNAP12004 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.89■□□□□ 0.62
PCNAP12004 TFP1-202ENST00000475455 1573 ntBASIC18.89■□□□□ 0.62
PCNAP12004 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.89■□□□□ 0.62
PCNAP12004 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.62
PCNAP12004 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.89■□□□□ 0.61
PCNAP12004 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCNAP12004 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.89■□□□□ 0.61
PCNAP12004 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCNAP12004 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCNAP12004 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.89■□□□□ 0.61
PCNAP12004 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.89■□□□□ 0.61
PCNAP12004 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.89■□□□□ 0.61
PCNAP12004 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
PCNAP12004 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.89■□□□□ 0.61
PCNAP12004 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.89■□□□□ 0.61
PCNAP12004 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
PCNAP12004 TNXA-203ENST00000507684 2038 ntBASIC18.89■□□□□ 0.61
PCNAP12004 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCNAP12004 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PCNAP12004 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.89■□□□□ 0.61
PCNAP12004 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
PCNAP12004 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCNAP12004 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCNAP12004 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCNAP12004 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PCNAP12004 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PCNAP12004 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCNAP12004 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.88■□□□□ 0.61
PCNAP12004 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.88■□□□□ 0.61
PCNAP12004 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PCNAP12004 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCNAP12004 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.88■□□□□ 0.61
PCNAP12004 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCNAP12004 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCNAP12004 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCNAP12004 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
PCNAP12004 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCNAP12004 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCNAP12004 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCNAP12004 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCNAP12004 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCNAP12004 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCNAP12004 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.88■□□□□ 0.61
PCNAP12004 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
PCNAP12004 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.88■□□□□ 0.61
PCNAP12004 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PCNAP12004 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.88■□□□□ 0.61
PCNAP12004 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PCNAP12004 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.88■□□□□ 0.61
PCNAP12004 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCNAP12004 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCNAP12004 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
PCNAP12004 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCNAP12004 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.88■□□□□ 0.61
PCNAP12004 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PCNAP12004 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.88■□□□□ 0.61
PCNAP12004 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.88■□□□□ 0.61
PCNAP12004 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCNAP12004 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCNAP12004 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCNAP12004 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCNAP12004 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
PCNAP12004 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCNAP12004 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCNAP12004 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.87■□□□□ 0.61
PCNAP12004 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.87■□□□□ 0.61
PCNAP12004 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCNAP12004 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
PCNAP12004 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.87■□□□□ 0.61
PCNAP12004 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCNAP12004 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCNAP12004 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.87■□□□□ 0.61
PCNAP12004 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.87■□□□□ 0.61
PCNAP12004 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCNAP12004 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCNAP12004 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCNAP12004 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.87■□□□□ 0.61
PCNAP12004 RNA5SP413-201ENST00000516373 109 ntBASIC18.87■□□□□ 0.61
PCNAP12004 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.87■□□□□ 0.61
PCNAP12004 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.87■□□□□ 0.61
PCNAP12004 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCNAP12004 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCNAP12004 AC008687.6-201ENST00000596318 630 ntBASIC18.87■□□□□ 0.61
PCNAP12004 AC005332.7-201ENST00000614046 2005 ntBASIC18.87■□□□□ 0.61
PCNAP12004 AC120498.8-201ENST00000614275 531 ntBASIC18.87■□□□□ 0.61
PCNAP12004 AL121906.2-201ENST00000621597 723 ntBASIC18.87■□□□□ 0.61
PCNAP12004 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
PCNAP12004 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCNAP12004 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.87■□□□□ 0.61
PCNAP12004 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCNAP12004 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCNAP12004 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.86■□□□□ 0.61
PCNAP12004 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCNAP12004 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCNAP12004 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.86■□□□□ 0.61
PCNAP12004 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms