Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CSB-PGBD3P0DP91 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CSB-PGBD3P0DP91 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CSB-PGBD3P0DP91 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC25.79■■□□□ 1.72
CSB-PGBD3P0DP91 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC25.79■■□□□ 1.72
CSB-PGBD3P0DP91 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CSB-PGBD3P0DP91 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC25.79■■□□□ 1.72
CSB-PGBD3P0DP91 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC25.79■■□□□ 1.72
CSB-PGBD3P0DP91 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC25.79■■□□□ 1.72
CSB-PGBD3P0DP91 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC25.79■■□□□ 1.72
CSB-PGBD3P0DP91 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CSB-PGBD3P0DP91 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CSB-PGBD3P0DP91 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CSB-PGBD3P0DP91 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CSB-PGBD3P0DP91 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC25.79■■□□□ 1.72
CSB-PGBD3P0DP91 AC026396.1-201ENST00000419388 421 ntBASIC25.78■■□□□ 1.72
CSB-PGBD3P0DP91 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC25.78■■□□□ 1.72
CSB-PGBD3P0DP91 PTK2-216ENST00000519881 863 ntTSL 3 BASIC25.78■■□□□ 1.72
CSB-PGBD3P0DP91 CD81-212ENST00000526072 1172 ntTSL 5 BASIC25.78■■□□□ 1.72
CSB-PGBD3P0DP91 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC25.78■■□□□ 1.72
CSB-PGBD3P0DP91 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC25.78■■□□□ 1.72
CSB-PGBD3P0DP91 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC25.78■■□□□ 1.72
CSB-PGBD3P0DP91 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
CSB-PGBD3P0DP91 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC25.78■■□□□ 1.72
CSB-PGBD3P0DP91 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC25.78■■□□□ 1.72
CSB-PGBD3P0DP91 KRT8P41-201ENST00000533985 1514 ntBASIC25.78■■□□□ 1.72
CSB-PGBD3P0DP91 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 AC026310.3-201ENST00000625186 2373 ntBASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 AC112907.2-201ENST00000448639 330 ntBASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 AP001271.2-201ENST00000624018 1556 ntBASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC25.77■■□□□ 1.72
CSB-PGBD3P0DP91 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
CSB-PGBD3P0DP91 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC25.76■■□□□ 1.71
CSB-PGBD3P0DP91 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
CSB-PGBD3P0DP91 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC25.76■■□□□ 1.71
CSB-PGBD3P0DP91 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC25.76■■□□□ 1.71
CSB-PGBD3P0DP91 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC25.76■■□□□ 1.71
CSB-PGBD3P0DP91 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
CSB-PGBD3P0DP91 NDUFV2-AS1-203ENST00000608008 779 ntBASIC25.76■■□□□ 1.71
CSB-PGBD3P0DP91 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC25.76■■□□□ 1.71
CSB-PGBD3P0DP91 CLN6-214ENST00000636314 442 ntTSL 3 BASIC25.76■■□□□ 1.71
CSB-PGBD3P0DP91 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC25.76■■□□□ 1.71
CSB-PGBD3P0DP91 VPS72-207ENST00000640458 689 ntTSL 5 BASIC25.76■■□□□ 1.71
CSB-PGBD3P0DP91 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC25.76■■□□□ 1.71
CSB-PGBD3P0DP91 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC25.76■■□□□ 1.71
CSB-PGBD3P0DP91 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
CSB-PGBD3P0DP91 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
CSB-PGBD3P0DP91 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC25.75■■□□□ 1.71
CSB-PGBD3P0DP91 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC25.75■■□□□ 1.71
CSB-PGBD3P0DP91 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC25.75■■□□□ 1.71
CSB-PGBD3P0DP91 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC25.75■■□□□ 1.71
CSB-PGBD3P0DP91 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CSB-PGBD3P0DP91 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC25.75■■□□□ 1.71
CSB-PGBD3P0DP91 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
CSB-PGBD3P0DP91 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC25.75■■□□□ 1.71
CSB-PGBD3P0DP91 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC25.75■■□□□ 1.71
CSB-PGBD3P0DP91 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC25.75■■□□□ 1.71
CSB-PGBD3P0DP91 AL136038.3-201ENST00000561909 1096 ntBASIC25.75■■□□□ 1.71
CSB-PGBD3P0DP91 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC25.75■■□□□ 1.71
CSB-PGBD3P0DP91 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC25.75■■□□□ 1.71
CSB-PGBD3P0DP91 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CSB-PGBD3P0DP91 MOK-225ENST00000522867 1883 ntTSL 5 BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 FXN-203ENST00000396366 922 ntTSL 2 BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 AP000523.1-201ENST00000398242 1049 ntBASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 DFFB-212ENST00000625756 649 ntTSL 5 BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 CD37-204ENST00000535669 1674 ntTSL 2 BASIC25.74■■□□□ 1.71
CSB-PGBD3P0DP91 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms