Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
HLA-DOAP06340 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC22.91■■□□□ 1.26
HLA-DOAP06340 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC22.91■■□□□ 1.26
HLA-DOAP06340 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC22.91■■□□□ 1.26
HLA-DOAP06340 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
HLA-DOAP06340 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC22.91■■□□□ 1.26
HLA-DOAP06340 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC22.91■■□□□ 1.26
HLA-DOAP06340 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
HLA-DOAP06340 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC22.91■■□□□ 1.26
HLA-DOAP06340 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
HLA-DOAP06340 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC22.91■■□□□ 1.26
HLA-DOAP06340 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
HLA-DOAP06340 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC22.91■■□□□ 1.26
HLA-DOAP06340 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
HLA-DOAP06340 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
HLA-DOAP06340 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
HLA-DOAP06340 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
HLA-DOAP06340 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
HLA-DOAP06340 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC22.9■■□□□ 1.26
HLA-DOAP06340 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
HLA-DOAP06340 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
HLA-DOAP06340 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC22.9■■□□□ 1.26
HLA-DOAP06340 HMGA1P5-201ENST00000412453 271 ntBASIC22.9■■□□□ 1.26
HLA-DOAP06340 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC22.9■■□□□ 1.26
HLA-DOAP06340 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
HLA-DOAP06340 LGALS8-AS1-201ENST00000487567 1457 ntBASIC22.9■■□□□ 1.26
HLA-DOAP06340 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC22.9■■□□□ 1.26
HLA-DOAP06340 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.26
HLA-DOAP06340 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC22.89■■□□□ 1.26
HLA-DOAP06340 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
HLA-DOAP06340 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
HLA-DOAP06340 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.26
HLA-DOAP06340 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
HLA-DOAP06340 ANKRD18DP-204ENST00000455355 1975 ntBASIC22.89■■□□□ 1.26
HLA-DOAP06340 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC22.89■■□□□ 1.26
HLA-DOAP06340 KRT8P41-201ENST00000533985 1514 ntBASIC22.89■■□□□ 1.26
HLA-DOAP06340 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC22.89■■□□□ 1.25
HLA-DOAP06340 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
HLA-DOAP06340 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC22.89■■□□□ 1.25
HLA-DOAP06340 KRT18P35-201ENST00000510488 1269 ntBASIC22.89■■□□□ 1.25
HLA-DOAP06340 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC22.89■■□□□ 1.25
HLA-DOAP06340 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC22.89■■□□□ 1.25
HLA-DOAP06340 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC22.89■■□□□ 1.25
HLA-DOAP06340 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
HLA-DOAP06340 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
HLA-DOAP06340 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
HLA-DOAP06340 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC22.89■■□□□ 1.25
HLA-DOAP06340 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
HLA-DOAP06340 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
HLA-DOAP06340 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
HLA-DOAP06340 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC22.88■■□□□ 1.25
HLA-DOAP06340 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
HLA-DOAP06340 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC22.88■■□□□ 1.25
HLA-DOAP06340 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC22.88■■□□□ 1.25
HLA-DOAP06340 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC22.88■■□□□ 1.25
HLA-DOAP06340 RBM42-202ENST00000586618 771 ntTSL 3 BASIC22.88■■□□□ 1.25
HLA-DOAP06340 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
HLA-DOAP06340 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC22.88■■□□□ 1.25
HLA-DOAP06340 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
HLA-DOAP06340 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
HLA-DOAP06340 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC22.88■■□□□ 1.25
HLA-DOAP06340 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC22.88■■□□□ 1.25
HLA-DOAP06340 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC22.87■■□□□ 1.25
HLA-DOAP06340 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HLA-DOAP06340 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
HLA-DOAP06340 LINC01006-201ENST00000333319 2292 ntBASIC22.87■■□□□ 1.25
HLA-DOAP06340 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
HLA-DOAP06340 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
HLA-DOAP06340 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HLA-DOAP06340 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC22.87■■□□□ 1.25
HLA-DOAP06340 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC22.87■■□□□ 1.25
HLA-DOAP06340 AC010653.2-201ENST00000623505 997 ntBASIC22.87■■□□□ 1.25
HLA-DOAP06340 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
HLA-DOAP06340 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
HLA-DOAP06340 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HLA-DOAP06340 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC22.87■■□□□ 1.25
HLA-DOAP06340 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
HLA-DOAP06340 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC22.87■■□□□ 1.25
HLA-DOAP06340 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC22.87■■□□□ 1.25
HLA-DOAP06340 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
HLA-DOAP06340 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
HLA-DOAP06340 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
HLA-DOAP06340 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
HLA-DOAP06340 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
HLA-DOAP06340 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC22.86■■□□□ 1.25
HLA-DOAP06340 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC22.86■■□□□ 1.25
HLA-DOAP06340 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC22.86■■□□□ 1.25
HLA-DOAP06340 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC22.86■■□□□ 1.25
HLA-DOAP06340 USP39-204ENST00000409766 2033 ntTSL 2 BASIC22.86■■□□□ 1.25
HLA-DOAP06340 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
HLA-DOAP06340 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
HLA-DOAP06340 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
HLA-DOAP06340 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
HLA-DOAP06340 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
HLA-DOAP06340 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC22.86■■□□□ 1.25
HLA-DOAP06340 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
HLA-DOAP06340 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
HLA-DOAP06340 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
HLA-DOAP06340 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
HLA-DOAP06340 ARMC10P1-201ENST00000313754 855 ntBASIC22.86■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms