Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
APOEP02649 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
APOEP02649 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
APOEP02649 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
APOEP02649 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.35■□□□□ 0.85
APOEP02649 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
APOEP02649 MIR718-201ENST00000390190 70 ntBASIC20.35■□□□□ 0.85
APOEP02649 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
APOEP02649 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
APOEP02649 KRT18P16-201ENST00000510337 1294 ntBASIC20.35■□□□□ 0.85
APOEP02649 AC093827.2-201ENST00000512654 315 ntBASIC20.35■□□□□ 0.85
APOEP02649 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.35■□□□□ 0.85
APOEP02649 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.35■□□□□ 0.85
APOEP02649 RARRES2P10-201ENST00000564312 460 ntBASIC20.35■□□□□ 0.85
APOEP02649 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.35■□□□□ 0.85
APOEP02649 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.35■□□□□ 0.85
APOEP02649 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.35■□□□□ 0.85
APOEP02649 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
APOEP02649 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
APOEP02649 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
APOEP02649 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
APOEP02649 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
APOEP02649 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
APOEP02649 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
APOEP02649 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
APOEP02649 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
APOEP02649 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
APOEP02649 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
APOEP02649 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
APOEP02649 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
APOEP02649 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.34■□□□□ 0.85
APOEP02649 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
APOEP02649 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
APOEP02649 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.34■□□□□ 0.85
APOEP02649 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
APOEP02649 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
APOEP02649 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
APOEP02649 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.33■□□□□ 0.85
APOEP02649 HTR7P1-201ENST00000538670 1336 ntBASIC20.33■□□□□ 0.85
APOEP02649 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
APOEP02649 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.33■□□□□ 0.85
APOEP02649 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
APOEP02649 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
APOEP02649 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
APOEP02649 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
APOEP02649 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
APOEP02649 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.33■□□□□ 0.85
APOEP02649 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
APOEP02649 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.33■□□□□ 0.85
APOEP02649 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
APOEP02649 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.33■□□□□ 0.85
APOEP02649 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
APOEP02649 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
APOEP02649 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
APOEP02649 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
APOEP02649 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
APOEP02649 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.33■□□□□ 0.84
APOEP02649 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
APOEP02649 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.84
APOEP02649 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
APOEP02649 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
APOEP02649 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
APOEP02649 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
APOEP02649 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
APOEP02649 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.32■□□□□ 0.84
APOEP02649 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.32■□□□□ 0.84
APOEP02649 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
APOEP02649 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
APOEP02649 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.32■□□□□ 0.84
APOEP02649 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
APOEP02649 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
APOEP02649 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
APOEP02649 AL353807.1-201ENST00000427475 662 ntBASIC20.32■□□□□ 0.84
APOEP02649 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.32■□□□□ 0.84
APOEP02649 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.32■□□□□ 0.84
APOEP02649 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
APOEP02649 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
APOEP02649 AL158211.5-201ENST00000623583 2518 ntBASIC20.32■□□□□ 0.84
APOEP02649 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
APOEP02649 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
APOEP02649 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
APOEP02649 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.32■□□□□ 0.84
APOEP02649 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
APOEP02649 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
APOEP02649 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.31■□□□□ 0.84
APOEP02649 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.31■□□□□ 0.84
APOEP02649 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
APOEP02649 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
APOEP02649 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
APOEP02649 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
APOEP02649 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
APOEP02649 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
APOEP02649 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
APOEP02649 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
APOEP02649 AC012618.2-201ENST00000428058 849 ntBASIC20.31■□□□□ 0.84
APOEP02649 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
APOEP02649 RPS2P4-201ENST00000476944 856 ntBASIC20.31■□□□□ 0.84
APOEP02649 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
APOEP02649 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
APOEP02649 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms