Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDB3O75112 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LDB3O75112 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.3■□□□□ 0.52
LDB3O75112 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDB3O75112 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDB3O75112 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.3■□□□□ 0.52
LDB3O75112 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.3■□□□□ 0.52
LDB3O75112 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDB3O75112 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDB3O75112 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
LDB3O75112 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LDB3O75112 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LDB3O75112 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDB3O75112 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.29■□□□□ 0.52
LDB3O75112 HTR7P1-201ENST00000538670 1336 ntBASIC18.29■□□□□ 0.52
LDB3O75112 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDB3O75112 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
LDB3O75112 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
LDB3O75112 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LDB3O75112 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDB3O75112 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDB3O75112 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.29■□□□□ 0.52
LDB3O75112 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDB3O75112 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.29■□□□□ 0.52
LDB3O75112 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.29■□□□□ 0.52
LDB3O75112 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LDB3O75112 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.29■□□□□ 0.52
LDB3O75112 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDB3O75112 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.29■□□□□ 0.52
LDB3O75112 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.29■□□□□ 0.52
LDB3O75112 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDB3O75112 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDB3O75112 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
LDB3O75112 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDB3O75112 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDB3O75112 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
LDB3O75112 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
LDB3O75112 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDB3O75112 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
LDB3O75112 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LDB3O75112 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDB3O75112 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDB3O75112 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDB3O75112 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDB3O75112 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
LDB3O75112 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
LDB3O75112 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LDB3O75112 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
LDB3O75112 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDB3O75112 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDB3O75112 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.28■□□□□ 0.52
LDB3O75112 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDB3O75112 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.28■□□□□ 0.52
LDB3O75112 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.28■□□□□ 0.52
LDB3O75112 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.28■□□□□ 0.52
LDB3O75112 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.28■□□□□ 0.52
LDB3O75112 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.28■□□□□ 0.52
LDB3O75112 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.28■□□□□ 0.52
LDB3O75112 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.28■□□□□ 0.52
LDB3O75112 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LDB3O75112 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.28■□□□□ 0.52
LDB3O75112 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
LDB3O75112 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDB3O75112 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.28■□□□□ 0.52
LDB3O75112 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
LDB3O75112 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDB3O75112 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LDB3O75112 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
LDB3O75112 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.28■□□□□ 0.52
LDB3O75112 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDB3O75112 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
LDB3O75112 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDB3O75112 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
LDB3O75112 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.27■□□□□ 0.52
LDB3O75112 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.27■□□□□ 0.52
LDB3O75112 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.27■□□□□ 0.52
LDB3O75112 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDB3O75112 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LDB3O75112 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDB3O75112 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.27■□□□□ 0.52
LDB3O75112 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.27■□□□□ 0.52
LDB3O75112 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
LDB3O75112 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.27■□□□□ 0.52
LDB3O75112 AC007952.6-201ENST00000573168 2673 ntBASIC18.27■□□□□ 0.52
LDB3O75112 AC003957.1-201ENST00000625108 2673 ntBASIC18.27■□□□□ 0.52
LDB3O75112 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.27■□□□□ 0.52
LDB3O75112 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
LDB3O75112 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
LDB3O75112 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
LDB3O75112 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.51
LDB3O75112 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
LDB3O75112 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.27■□□□□ 0.51
LDB3O75112 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LDB3O75112 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LDB3O75112 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB3O75112 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.26■□□□□ 0.51
LDB3O75112 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
LDB3O75112 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDB3O75112 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
LDB3O75112 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms