Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN3O00409 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN3O00409 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN3O00409 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN3O00409 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXN3O00409 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
FOXN3O00409 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN3O00409 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN3O00409 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.8■□□□□ 0.92
FOXN3O00409 SDHAP1-207ENST00000440850 2000 ntBASIC20.8■□□□□ 0.92
FOXN3O00409 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN3O00409 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN3O00409 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN3O00409 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.8■□□□□ 0.92
FOXN3O00409 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN3O00409 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
FOXN3O00409 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.8■□□□□ 0.92
FOXN3O00409 TUBB8P6-201ENST00000436895 1288 ntBASIC20.8■□□□□ 0.92
FOXN3O00409 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.8■□□□□ 0.92
FOXN3O00409 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
FOXN3O00409 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.8■□□□□ 0.92
FOXN3O00409 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN3O00409 MTDHP1-201ENST00000605323 784 ntBASIC20.8■□□□□ 0.92
FOXN3O00409 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN3O00409 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.8■□□□□ 0.92
FOXN3O00409 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN3O00409 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
FOXN3O00409 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN3O00409 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN3O00409 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN3O00409 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXN3O00409 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
FOXN3O00409 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
FOXN3O00409 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.8■□□□□ 0.92
FOXN3O00409 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
FOXN3O00409 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.79■□□□□ 0.92
FOXN3O00409 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
FOXN3O00409 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
FOXN3O00409 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
FOXN3O00409 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
FOXN3O00409 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.79■□□□□ 0.92
FOXN3O00409 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
FOXN3O00409 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.79■□□□□ 0.92
FOXN3O00409 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.79■□□□□ 0.92
FOXN3O00409 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
FOXN3O00409 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.79■□□□□ 0.92
FOXN3O00409 TEX21P-204ENST00000641479 1693 ntBASIC20.79■□□□□ 0.92
FOXN3O00409 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
FOXN3O00409 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
FOXN3O00409 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.79■□□□□ 0.92
FOXN3O00409 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
FOXN3O00409 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
FOXN3O00409 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
FOXN3O00409 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
FOXN3O00409 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
FOXN3O00409 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
FOXN3O00409 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
FOXN3O00409 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXN3O00409 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXN3O00409 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXN3O00409 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
FOXN3O00409 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXN3O00409 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.78■□□□□ 0.92
FOXN3O00409 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
FOXN3O00409 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.78■□□□□ 0.92
FOXN3O00409 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
FOXN3O00409 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
FOXN3O00409 KRT17P3-201ENST00000420566 1262 ntBASIC20.78■□□□□ 0.92
FOXN3O00409 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
FOXN3O00409 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
FOXN3O00409 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.78■□□□□ 0.92
FOXN3O00409 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXN3O00409 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
FOXN3O00409 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXN3O00409 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXN3O00409 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXN3O00409 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXN3O00409 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.78■□□□□ 0.92
FOXN3O00409 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.78■□□□□ 0.92
FOXN3O00409 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.78■□□□□ 0.92
FOXN3O00409 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
FOXN3O00409 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
FOXN3O00409 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
FOXN3O00409 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.77■□□□□ 0.92
FOXN3O00409 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
FOXN3O00409 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.77■□□□□ 0.92
FOXN3O00409 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.77■□□□□ 0.92
FOXN3O00409 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
FOXN3O00409 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.77■□□□□ 0.92
FOXN3O00409 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
FOXN3O00409 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.77■□□□□ 0.92
FOXN3O00409 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.77■□□□□ 0.92
FOXN3O00409 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
FOXN3O00409 AC069544.1-201ENST00000609399 999 ntBASIC20.77■□□□□ 0.92
FOXN3O00409 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.77■□□□□ 0.92
FOXN3O00409 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
FOXN3O00409 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.77■□□□□ 0.92
FOXN3O00409 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
FOXN3O00409 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
FOXN3O00409 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms