Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 TCF4-248ENST00000616053 8140 ntTSL 5 BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 RP9P-202ENST00000450133 1212 ntBASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 CA15P2-201ENST00000611168 834 ntBASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 LINC01971-201ENST00000617888 1048 ntBASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 ANKRD26P3-201ENST00000454044 2748 ntBASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC10.81□□□□□ -0.68
CHKB-CPT1BH3BT56 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 LINC01529-204ENST00000636474 1715 ntBASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 CEP83-AS1-201ENST00000623122 2482 ntBASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 CEP85L-203ENST00000368491 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CHKB-CPT1BH3BT56 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CHKB-CPT1BH3BT56 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC10.79□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms