Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.47■□□□□ 0.71
TRIM49D1C9J1S8 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM49D1C9J1S8 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.47■□□□□ 0.71
TRIM49D1C9J1S8 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.47■□□□□ 0.71
TRIM49D1C9J1S8 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
TRIM49D1C9J1S8 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM49D1C9J1S8 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM49D1C9J1S8 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 GPX1P1-201ENST00000388829 606 ntBASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 AL512625.2-201ENST00000417533 625 ntBASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM49D1C9J1S8 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 TFP1-202ENST00000475455 1573 ntBASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 ZNF815P-204ENST00000434898 1737 ntBASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM49D1C9J1S8 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM49D1C9J1S8 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM49D1C9J1S8 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM49D1C9J1S8 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.43■□□□□ 0.7
TRIM49D1C9J1S8 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM49D1C9J1S8 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM49D1C9J1S8 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms