Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 CCT8P1-201ENST00000413611 1657 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 AL137100.1-201ENST00000556703 1620 ntBASIC4.83□□□□□ -1.64
HDDC3Q8N4P3 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 CASC19-204ENST00000641001 2055 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 RPS27AP11-201ENST00000402798 447 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 RN7SKP16-201ENST00000410180 299 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 OR13Z1P-201ENST00000416141 834 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 AL358176.3-201ENST00000420757 454 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 AC234779.1-201ENST00000425910 285 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 AC073069.1-201ENST00000428657 441 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 RPS17P8-201ENST00000434525 335 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 MTND2P21-201ENST00000436242 1042 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 HGF-207ENST00000453018 721 ntTSL 3 BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 AC020898.1-201ENST00000474167 787 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 RN7SL558P-201ENST00000497468 299 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 AC091868.1-201ENST00000508746 304 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 AC093824.1-201ENST00000508796 343 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 RNU1-6P-201ENST00000516290 144 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 HMGB1P46-201ENST00000520062 610 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 OR5M2P-201ENST00000529003 936 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 RN7SL802P-201ENST00000577858 299 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 MIR5699-201ENST00000578903 90 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 BNIP3P33-201ENST00000598912 569 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 AC009032.1-201ENST00000617574 431 ntBASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
HDDC3Q8N4P3 TCP1P3-201ENST00000414406 1498 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 AL442639.1-201ENST00000625030 1899 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 TLK1P1-201ENST00000456760 2440 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 AC017079.1-201ENST00000333650 415 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 RNA5SP447-201ENST00000363749 119 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 SNORA70F-201ENST00000384142 135 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 MIR129-1-201ENST00000384972 72 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 RNU1-82P-201ENST00000390851 165 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 CTSL3P-202ENST00000412179 788 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 LINC00993-201ENST00000420453 540 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 RPL23AP1-201ENST00000428990 471 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 AL162591.2-201ENST00000449634 317 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 CEACAMP6-201ENST00000452007 574 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 AC245028.2-201ENST00000458673 253 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 RN7SL517P-201ENST00000462240 305 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 RN7SKP21-201ENST00000516503 220 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 RNU6-709P-201ENST00000517257 104 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 AC138701.1-201ENST00000524329 714 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 MIR4472-2-201ENST00000582069 67 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 AL121873.1-201ENST00000616013 524 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms