RNA–Protein interactions for RNA: ENST00000520062.1

HMGB1P46-201, Transcript of high mobility group box 1 pseudogene 46, humanhuman

BASIC

Gene HMGB1P46, Length 610 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P46-201ENST00000520062 CHIC1Q5VXU3 224 aa21.72■■□□□ 1.07
HMGB1P46-201ENST00000520062 AEBP2Q6ZN18 517 aaPredicted RBP21.57■■□□□ 1.04
HMGB1P46-201ENST00000520062 PHF23Q9BUL5 403 aaPredicted RBP19.13■□□□□ 0.65
HMGB1P46-201ENST00000520062 SENP3Q9H4L4 574 aaPredicted RBP18.28■□□□□ 0.52
HMGB1P46-201ENST00000520062 PLPPR3Q6T4P5 718 aa17.93■□□□□ 0.46
HMGB1P46-201ENST00000520062 FOXD1Q16676 465 aa16.83■□□□□ 0.28
HMGB1P46-201ENST00000520062 ADRA2BP18089 450 aa16.67■□□□□ 0.26
HMGB1P46-201ENST00000520062 PPP6R1Q9UPN7 881 aa16.64■□□□□ 0.25
HMGB1P46-201ENST00000520062 KCNA4P22459 653 aa16.14■□□□□ 0.17
HMGB1P46-201ENST00000520062 PIAS4Q8N2W9 510 aaPredicted RBP16.02■□□□□ 0.16
HMGB1P46-201ENST00000520062 PPP4R3CPQ6ZMV5 832 aa15.84■□□□□ 0.13
HMGB1P46-201ENST00000520062 EHMT2Q96KQ7 1210 aa15.7■□□□□ 0.1
HMGB1P46-201ENST00000520062 NCBP3Q53F19 620 aaKnown RBP15.65■□□□□ 0.1
HMGB1P46-201ENST00000520062 SLC4A1APQ9BWU0 796 aaKnown RBP15.51■□□□□ 0.07
HMGB1P46-201ENST00000520062 NPM3O75607 178 aaKnown RBP15.37■□□□□ 0.05
HMGB1P46-201ENST00000520062 MSH5O43196 834 aa15.35■□□□□ 0.05
HMGB1P46-201ENST00000520062 SCAF1Q9H7N4 1312 aaKnown RBP15.35■□□□□ 0.05
HMGB1P46-201ENST00000520062 CNKSR2Q8WXI2 1034 aa15.3■□□□□ 0.04
HMGB1P46-201ENST00000520062 CSRNP3Q8WYN3 585 aa15.29■□□□□ 0.04
HMGB1P46-201ENST00000520062 DNAJC5BQ9UF47 199 aa14.98□□□□□ -0.01
HMGB1P46-201ENST00000520062 MAPK8IP2Q13387 824 aaPredicted RBP14.91□□□□□ -0.02
HMGB1P46-201ENST00000520062 ZBTB22O15209 634 aa14.86□□□□□ -0.03
HMGB1P46-201ENST00000520062 RNF216Q9NWF9 866 aaPredicted RBP14.86□□□□□ -0.03
HMGB1P46-201ENST00000520062 FOXD4L1Q9NU39 408 aa14.74□□□□□ -0.05
HMGB1P46-201ENST00000520062 DMRT2Q9Y5R5 561 aa14.69□□□□□ -0.06
HMGB1P46-201ENST00000520062 HOXD11P31277 338 aaPredicted RBP14.64□□□□□ -0.07
HMGB1P46-201ENST00000520062 SLC4A2P04920 1241 aa14.36□□□□□ -0.11
HMGB1P46-201ENST00000520062 MYCNP04198 464 aaPredicted RBP14.23□□□□□ -0.13
HMGB1P46-201ENST00000520062 ATXN8OSP0DMR3 200 aa14.23□□□□□ -0.13
HMGB1P46-201ENST00000520062 DCAF8L1A6NGE4 600 aa13.91□□□□□ -0.18
HMGB1P46-201ENST00000520062 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.9□□□□□ -0.18
HMGB1P46-201ENST00000520062 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.86□□□□□ -0.19
HMGB1P46-201ENST00000520062 HNRNPUL2Q1KMD3 747 aaKnown RBP13.86□□□□□ -0.19
HMGB1P46-201ENST00000520062 SAMD1Q6SPF0 538 aaPredicted RBP13.82□□□□□ -0.2
HMGB1P46-201ENST00000520062 FKBP8Q14318 412 aa13.77□□□□□ -0.21
HMGB1P46-201ENST00000520062 U3KPZ7 1027 aaPredicted RBP13.75□□□□□ -0.21
HMGB1P46-201ENST00000520062 ATF5Q9Y2D1 282 aaPredicted RBP13.72□□□□□ -0.21
HMGB1P46-201ENST00000520062 AMER1Q5JTC6 1135 aaPredicted RBP13.71□□□□□ -0.21
HMGB1P46-201ENST00000520062 RTN4Q9NQC3 1192 aaKnown RBP13.61□□□□□ -0.23
HMGB1P46-201ENST00000520062 APLP2Q06481 763 aa13.59□□□□□ -0.23
HMGB1P46-201ENST00000520062 ZNF219Q9P2Y4 722 aaPredicted RBP13.49□□□□□ -0.25
HMGB1P46-201ENST00000520062 SLC24A1O60721 1099 aa13.33□□□□□ -0.28
HMGB1P46-201ENST00000520062 SPDYE4A6NLX3 237 aa13.21□□□□□ -0.29
HMGB1P46-201ENST00000520062 FBXO3Q9UK99 471 aa13.2□□□□□ -0.3
HMGB1P46-201ENST00000520062 MKRN4PQ13434 485 aaPredicted RBP13.19□□□□□ -0.3
HMGB1P46-201ENST00000520062 FBLN2P98095 1184 aa13.18□□□□□ -0.3
HMGB1P46-201ENST00000520062 RNF39Q9H2S5 420 aa13.18□□□□□ -0.3
HMGB1P46-201ENST00000520062 TRHP20396 242 aaPredicted RBP13.14□□□□□ -0.31
HMGB1P46-201ENST00000520062 PROM2Q8N271 834 aa13.14□□□□□ -0.31
HMGB1P46-201ENST00000520062 SPINK5Q9NQ38 1064 aaPredicted RBP13.14□□□□□ -0.31
HMGB1P46-201ENST00000520062 POLA2Q14181 598 aa13.1□□□□□ -0.31
HMGB1P46-201ENST00000520062 C1QBPQ07021 282 aaKnown RBP13.09□□□□□ -0.31
HMGB1P46-201ENST00000520062 CAPN15O75808 1086 aa13.07□□□□□ -0.32
HMGB1P46-201ENST00000520062 ZBTB12Q9Y330 459 aaPredicted RBP13.02□□□□□ -0.33
HMGB1P46-201ENST00000520062 VASPP50552 380 aaPredicted RBP12.96□□□□□ -0.33
HMGB1P46-201ENST00000520062 ABCB7O75027 752 aa12.85□□□□□ -0.35
HMGB1P46-201ENST00000520062 POTEDQ86YR6 584 aa12.82□□□□□ -0.36
HMGB1P46-201ENST00000520062 IFNLR1Q8IU57 520 aaPredicted RBP12.81□□□□□ -0.36
HMGB1P46-201ENST00000520062 DSG3P32926 999 aa12.74□□□□□ -0.37
HMGB1P46-201ENST00000520062 SPDYE2BA6NHP3 402 aa12.69□□□□□ -0.38
HMGB1P46-201ENST00000520062 SPDYE6P0CI01 402 aa12.69□□□□□ -0.38
HMGB1P46-201ENST00000520062 SPDYE2Q495Y8 402 aa12.69□□□□□ -0.38
HMGB1P46-201ENST00000520062 ZNF692Q9BU19 519 aaPredicted RBP12.69□□□□□ -0.38
HMGB1P46-201ENST00000520062 STAG3Q9UJ98 1225 aa12.67□□□□□ -0.38
HMGB1P46-201ENST00000520062 SSUH2Q9Y2M2 353 aa12.65□□□□□ -0.38
HMGB1P46-201ENST00000520062 PLCB2Q00722 1185 aa12.62□□□□□ -0.39
HMGB1P46-201ENST00000520062 PKD2Q13563 968 aa12.62□□□□□ -0.39
HMGB1P46-201ENST00000520062 OSCARQ8IYS5 282 aa12.62□□□□□ -0.39
HMGB1P46-201ENST00000520062 SPOCK2Q92563 424 aa12.58□□□□□ -0.4
HMGB1P46-201ENST00000520062 KLHL34Q8N239 644 aa12.56□□□□□ -0.4
HMGB1P46-201ENST00000520062 PABPN1Q86U42 306 aaKnown RBP eCLIP12.53□□□□□ -0.4
HMGB1P46-201ENST00000520062 DCAF8L2P0C7V8 631 aa12.52□□□□□ -0.41
HMGB1P46-201ENST00000520062 PLCD3Q8N3E9 789 aa12.5□□□□□ -0.41
HMGB1P46-201ENST00000520062 ECM2O94769 699 aaPredicted RBP12.43□□□□□ -0.42
HMGB1P46-201ENST00000520062 MIER1Q8N108 512 aa12.43□□□□□ -0.42
HMGB1P46-201ENST00000520062 ZBTB47Q9UFB7 747 aaPredicted RBP12.4□□□□□ -0.42
HMGB1P46-201ENST00000520062 PLEKHG5O94827 1062 aa12.39□□□□□ -0.43
HMGB1P46-201ENST00000520062 HAP1P54257 671 aaPredicted RBP12.38□□□□□ -0.43
HMGB1P46-201ENST00000520062 BBXQ8WY36 941 aaPredicted RBP12.35□□□□□ -0.43
HMGB1P46-201ENST00000520062 CACNB1Q02641 598 aaPredicted RBP12.34□□□□□ -0.43
HMGB1P46-201ENST00000520062 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.33□□□□□ -0.44
HMGB1P46-201ENST00000520062 VSIG10Q8N0Z9 540 aa12.29□□□□□ -0.44
HMGB1P46-201ENST00000520062 RGL2O15211 777 aa12.27□□□□□ -0.45
HMGB1P46-201ENST00000520062 TRIM41Q8WV44 630 aa12.27□□□□□ -0.45
HMGB1P46-201ENST00000520062 NPM1P06748 294 aaKnown RBP eCLIP12.25□□□□□ -0.45
HMGB1P46-201ENST00000520062 CIZ1Q9ULV3 898 aaPredicted RBP12.23□□□□□ -0.45
HMGB1P46-201ENST00000520062 RBM42Q9BTD8 480 aaKnown RBP12.18□□□□□ -0.46
HMGB1P46-201ENST00000520062 PAXIP1Q6ZW49 1069 aaPredicted RBP12.17□□□□□ -0.46
HMGB1P46-201ENST00000520062 SPDYE1Q8NFV5 336 aaPredicted RBP12.16□□□□□ -0.46
HMGB1P46-201ENST00000520062 BCANQ96GW7 911 aa12.16□□□□□ -0.46
HMGB1P46-201ENST00000520062 GSE1Q14687 1217 aa12.15□□□□□ -0.46
HMGB1P46-201ENST00000520062 AKT1S1Q96B36 256 aa12.15□□□□□ -0.46
HMGB1P46-201ENST00000520062 SPRYD3Q8NCJ5 442 aa12.13□□□□□ -0.47
HMGB1P46-201ENST00000520062 CFAP44Q96MT7 982 aa12.12□□□□□ -0.47
HMGB1P46-201ENST00000520062 CHGAP10645 457 aaKnown RBP12.1□□□□□ -0.47
HMGB1P46-201ENST00000520062 NUBP1P53384 320 aa12.08□□□□□ -0.48
HMGB1P46-201ENST00000520062 HS6ST3Q8IZP7 471 aa12.07□□□□□ -0.48
HMGB1P46-201ENST00000520062 KDM2AQ9Y2K7 1162 aa12.06□□□□□ -0.48
HMGB1P46-201ENST00000520062 DNAJC5Q9H3Z4 198 aa12.04□□□□□ -0.48
HMGB1P46-201ENST00000520062 TAOK2Q9UL54 1235 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms