Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
USH2AO75445 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC1.85□□□□□ -2.11
USH2AO75445 AC104333.2-201ENST00000422630 192 ntBASIC1.85□□□□□ -2.11
USH2AO75445 AL691449.1-201ENST00000426570 421 ntBASIC1.85□□□□□ -2.11
USH2AO75445 AC087650.1-201ENST00000431445 468 ntBASIC1.85□□□□□ -2.11
USH2AO75445 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC1.85□□□□□ -2.11
USH2AO75445 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC1.85□□□□□ -2.11
USH2AO75445 RN7SKP141-201ENST00000516167 338 ntBASIC1.85□□□□□ -2.11
USH2AO75445 AL352979.3-201ENST00000553515 247 ntBASIC1.85□□□□□ -2.11
USH2AO75445 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC1.85□□□□□ -2.11
USH2AO75445 AC012493.2-201ENST00000595083 291 ntBASIC1.85□□□□□ -2.11
USH2AO75445 AP001267.4-201ENST00000602598 545 ntBASIC1.85□□□□□ -2.11
USH2AO75445 CARMN-210ENST00000602964 8398 ntTSL 2 BASIC1.85□□□□□ -2.11
USH2AO75445 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
USH2AO75445 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
USH2AO75445 TTC3P1-201ENST00000399586 6081 ntBASIC1.85□□□□□ -2.11
USH2AO75445 PTPRT-206ENST00000373198 12746 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
USH2AO75445 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
USH2AO75445 TNC-202ENST00000350763 7641 ntAPPRIS P2 TSL 1 (best) BASIC1.85□□□□□ -2.11
USH2AO75445 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
USH2AO75445 MAPK10-303ENST00000641324 3959 ntBASIC1.85□□□□□ -2.11
USH2AO75445 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
USH2AO75445 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
USH2AO75445 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
USH2AO75445 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC1.85□□□□□ -2.11
USH2AO75445 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC1.85□□□□□ -2.11
USH2AO75445 AL513548.1-201ENST00000562904 1724 ntBASIC1.85□□□□□ -2.11
USH2AO75445 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC1.85□□□□□ -2.11
USH2AO75445 KIAA1024-201ENST00000305428 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
USH2AO75445 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
USH2AO75445 RNA5SP306-201ENST00000411087 107 ntBASIC1.84□□□□□ -2.11
USH2AO75445 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC1.84□□□□□ -2.11
USH2AO75445 AC099670.2-201ENST00000435130 321 ntBASIC1.84□□□□□ -2.11
USH2AO75445 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC1.84□□□□□ -2.11
USH2AO75445 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC1.84□□□□□ -2.11
USH2AO75445 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC1.84□□□□□ -2.11
USH2AO75445 PTS-202ENST00000524931 696 ntTSL 3 BASIC1.84□□□□□ -2.11
USH2AO75445 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC1.84□□□□□ -2.11
USH2AO75445 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC1.84□□□□□ -2.11
USH2AO75445 CYCSP40-201ENST00000575927 294 ntBASIC1.84□□□□□ -2.11
USH2AO75445 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC1.84□□□□□ -2.11
USH2AO75445 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC1.84□□□□□ -2.11
USH2AO75445 SCN9A-203ENST00000409672 9768 ntAPPRIS P2 TSL 5 BASIC1.84□□□□□ -2.11
USH2AO75445 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC1.84□□□□□ -2.11
USH2AO75445 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC1.84□□□□□ -2.11
USH2AO75445 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC1.84□□□□□ -2.11
USH2AO75445 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC1.84□□□□□ -2.11
USH2AO75445 RPS11P1-201ENST00000451072 473 ntBASIC1.84□□□□□ -2.11
USH2AO75445 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC1.84□□□□□ -2.11
USH2AO75445 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC1.84□□□□□ -2.11
USH2AO75445 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC1.84□□□□□ -2.11
USH2AO75445 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC1.84□□□□□ -2.11
USH2AO75445 AC027176.2-201ENST00000559166 746 ntBASIC1.84□□□□□ -2.11
USH2AO75445 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC1.84□□□□□ -2.11
USH2AO75445 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC1.84□□□□□ -2.11
USH2AO75445 AL390838.2-201ENST00000602394 274 ntBASIC1.84□□□□□ -2.11
USH2AO75445 AC015804.1-201ENST00000622935 435 ntBASIC1.84□□□□□ -2.11
USH2AO75445 AF001550.2-201ENST00000636643 217 ntBASIC1.84□□□□□ -2.11
USH2AO75445 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC1.84□□□□□ -2.11
USH2AO75445 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 OSBPL9P1-201ENST00000604744 1469 ntBASIC1.84□□□□□ -2.11
USH2AO75445 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC1.84□□□□□ -2.11
USH2AO75445 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC1.84□□□□□ -2.11
USH2AO75445 VPS13A-205ENST00000376636 11145 ntAPPRIS ALT2 TSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC1.84□□□□□ -2.11
USH2AO75445 PRDM11-206ENST00000622142 10730 ntAPPRIS ALT2 TSL 5 BASIC1.84□□□□□ -2.11
USH2AO75445 PCDH15-230ENST00000617051 7048 ntTSL 5 BASIC1.84□□□□□ -2.11
USH2AO75445 MAPK10-328ENST00000641553 4009 ntBASIC1.84□□□□□ -2.11
USH2AO75445 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC1.84□□□□□ -2.11
USH2AO75445 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 RN7SKP222-201ENST00000410651 315 ntBASIC1.84□□□□□ -2.11
USH2AO75445 RPS29P4-201ENST00000414733 161 ntBASIC1.84□□□□□ -2.11
USH2AO75445 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC1.84□□□□□ -2.11
USH2AO75445 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC1.84□□□□□ -2.11
USH2AO75445 IGHVIII-13-1-201ENST00000517613 291 ntBASIC1.84□□□□□ -2.11
USH2AO75445 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC1.84□□□□□ -2.11
USH2AO75445 MIR6133-201ENST00000617057 108 ntBASIC1.84□□□□□ -2.11
USH2AO75445 ZNF445-202ENST00000425708 10052 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
USH2AO75445 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC1.84□□□□□ -2.12
USH2AO75445 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC1.84□□□□□ -2.12
USH2AO75445 AC123769.2-201ENST00000624332 5984 ntBASIC1.84□□□□□ -2.12
USH2AO75445 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
USH2AO75445 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC1.84□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms