RNA–Protein interactions for RNA: ENST00000409672.5

SCN9A-203, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS P2 TSL 5 BASIC

Gene SCN9A, Length 9,768 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-203ENST00000409672 DCAF8L2P0C7V8 631 aa15.17■□□□□ 0.02
SCN9A-203ENST00000409672 EHMT2Q96KQ7 1210 aa14.23□□□□□ -0.13
SCN9A-203ENST00000409672 SUPT5HO00267 1087 aaKnown RBP13.86□□□□□ -0.19
SCN9A-203ENST00000409672 SHROOM4Q9ULL8 1493 aa13.65□□□□□ -0.22
SCN9A-203ENST00000409672 TTBK1Q5TCY1 1321 aaPredicted RBP13.64□□□□□ -0.23
SCN9A-203ENST00000409672 RANGAP1P46060 587 aaPredicted RBP13.52□□□□□ -0.25
SCN9A-203ENST00000409672 ATP1B4Q9UN42 357 aaPredicted RBP13.39□□□□□ -0.27
SCN9A-203ENST00000409672 APLP2Q06481 763 aa13.33□□□□□ -0.28
SCN9A-203ENST00000409672 FAM9AQ8IZU1 332 aaPredicted RBP13.32□□□□□ -0.28
SCN9A-203ENST00000409672 PELP1Q8IZL8 1130 aaKnown RBP13.16□□□□□ -0.3
SCN9A-203ENST00000409672 CHIC1Q5VXU3 224 aa13.15□□□□□ -0.31
SCN9A-203ENST00000409672 MYT1LQ9UL68 1186 aa13.06□□□□□ -0.32
SCN9A-203ENST00000409672 ERICH6Q7L0X2 663 aa13.02□□□□□ -0.33
SCN9A-203ENST00000409672 PCGF6Q9BYE7 350 aa13.02□□□□□ -0.33
SCN9A-203ENST00000409672 CNGB1Q14028 1251 aaPredicted RBP12.91□□□□□ -0.34
SCN9A-203ENST00000409672 POLR3GLQ9BT43 218 aa12.86□□□□□ -0.35
SCN9A-203ENST00000409672 PPARGC1BQ86YN6 1023 aaKnown RBP12.81□□□□□ -0.36
SCN9A-203ENST00000409672 MYT1Q01538 1121 aa12.8□□□□□ -0.36
SCN9A-203ENST00000409672 SLC4A1APQ9BWU0 796 aaKnown RBP12.79□□□□□ -0.36
SCN9A-203ENST00000409672 YTHDC1Q96MU7 727 aaKnown RBP12.79□□□□□ -0.36
SCN9A-203ENST00000409672 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.78□□□□□ -0.36
SCN9A-203ENST00000409672 HNRNPUL2Q1KMD3 747 aaKnown RBP12.78□□□□□ -0.36
SCN9A-203ENST00000409672 UBTFP17480 764 aaKnown RBP12.75□□□□□ -0.37
SCN9A-203ENST00000409672 CCER1Q8TC90 406 aaPredicted RBP12.73□□□□□ -0.37
SCN9A-203ENST00000409672 ITGAEP38570 1179 aa12.68□□□□□ -0.38
SCN9A-203ENST00000409672 TRIM41Q8WV44 630 aa12.59□□□□□ -0.39
SCN9A-203ENST00000409672 NEFLP07196 543 aa12.54□□□□□ -0.4
SCN9A-203ENST00000409672 BCL11AQ9H165 835 aa12.52□□□□□ -0.41
SCN9A-203ENST00000409672 NISCHQ9Y2I1 1504 aa12.51□□□□□ -0.41
SCN9A-203ENST00000409672 SLC24A1O60721 1099 aa12.51□□□□□ -0.41
SCN9A-203ENST00000409672 PLPPR3Q6T4P5 718 aa12.48□□□□□ -0.41
SCN9A-203ENST00000409672 CENPBP07199 599 aaPredicted RBP12.46□□□□□ -0.41
SCN9A-203ENST00000409672 DAXXQ9UER7 740 aaPredicted RBP12.46□□□□□ -0.41
SCN9A-203ENST00000409672 BCANQ96GW7 911 aa12.35□□□□□ -0.43
SCN9A-203ENST00000409672 CLSPNQ9HAW4 1339 aa12.29□□□□□ -0.44
SCN9A-203ENST00000409672 FBLN2P98095 1184 aa12.25□□□□□ -0.45
SCN9A-203ENST00000409672 ZNF326Q5BKZ1 582 aaKnown RBP12.16□□□□□ -0.46
SCN9A-203ENST00000409672 ZNF316A6NFI3 1004 aaPredicted RBP12.15□□□□□ -0.46
SCN9A-203ENST00000409672 ARID3CA6NKF2 412 aa12.14□□□□□ -0.47
SCN9A-203ENST00000409672 FAM50AQ14320 339 aaKnown RBP12.14□□□□□ -0.47
SCN9A-203ENST00000409672 TRIM52Q96A61 297 aa12.13□□□□□ -0.47
SCN9A-203ENST00000409672 ZEB1P37275 1124 aaPredicted RBP12.12□□□□□ -0.47
SCN9A-203ENST00000409672 PLEKHG5O94827 1062 aa12.1□□□□□ -0.47
SCN9A-203ENST00000409672 A0A0G2JS52 829 aa12.08□□□□□ -0.48
SCN9A-203ENST00000409672 NEUROD1Q13562 356 aa12.08□□□□□ -0.48
SCN9A-203ENST00000409672 SENP3Q9H4L4 574 aaPredicted RBP12.05□□□□□ -0.48
SCN9A-203ENST00000409672 SCAF1Q9H7N4 1312 aaKnown RBP12.04□□□□□ -0.48
SCN9A-203ENST00000409672 PABPN1Q86U42 306 aaKnown RBP eCLIP12.04□□□□□ -0.48
SCN9A-203ENST00000409672 LOC105371045A0A1W2PR82 267 aa12.02□□□□□ -0.49
SCN9A-203ENST00000409672 ZBTB47Q9UFB7 747 aaPredicted RBP12.01□□□□□ -0.49
SCN9A-203ENST00000409672 CANXP27824 592 aaKnown RBP11.93□□□□□ -0.5
SCN9A-203ENST00000409672 ESF1Q9H501 851 aaKnown RBP11.91□□□□□ -0.5
SCN9A-203ENST00000409672 CHGAP10645 457 aaKnown RBP11.9□□□□□ -0.5
SCN9A-203ENST00000409672 P3H3Q8IVL6 736 aa11.89□□□□□ -0.51
SCN9A-203ENST00000409672 STAG3Q9UJ98 1225 aa11.88□□□□□ -0.51
SCN9A-203ENST00000409672 RTL5Q5HYW3 569 aaPredicted RBP11.88□□□□□ -0.51
SCN9A-203ENST00000409672 ZNF777Q9ULD5 760 aaPredicted RBP11.87□□□□□ -0.51
SCN9A-203ENST00000409672 ZBTB7CA1YPR0 619 aa11.87□□□□□ -0.51
SCN9A-203ENST00000409672 TRIM26Q12899 539 aaPredicted RBP11.83□□□□□ -0.52
SCN9A-203ENST00000409672 NEFMP07197 916 aa11.82□□□□□ -0.52
SCN9A-203ENST00000409672 TULP1O00294 542 aaPredicted RBP11.8□□□□□ -0.52
SCN9A-203ENST00000409672 HRCP23327 699 aa11.77□□□□□ -0.53
SCN9A-203ENST00000409672 ABCC9O60706 1549 aa11.75□□□□□ -0.53
SCN9A-203ENST00000409672 SALL2Q9Y467 1007 aaPredicted RBP11.74□□□□□ -0.53
SCN9A-203ENST00000409672 NPM2Q86SE8 214 aaKnown RBP11.73□□□□□ -0.53
SCN9A-203ENST00000409672 C14orf37Q86TY3 774 aa11.71□□□□□ -0.53
SCN9A-203ENST00000409672 ARXQ96QS3 562 aa11.69□□□□□ -0.54
SCN9A-203ENST00000409672 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.67□□□□□ -0.548e-7■□□□□ 11.1
SCN9A-203ENST00000409672 NCBP3Q53F19 620 aaKnown RBP11.67□□□□□ -0.54
SCN9A-203ENST00000409672 DIEXFQ68CQ4 756 aaKnown RBP11.67□□□□□ -0.54
SCN9A-203ENST00000409672 ANP32CO43423 234 aa11.64□□□□□ -0.55
SCN9A-203ENST00000409672 HAP1P54257 671 aaPredicted RBP11.61□□□□□ -0.55
SCN9A-203ENST00000409672 TAOK2Q9UL54 1235 aa11.61□□□□□ -0.55
SCN9A-203ENST00000409672 NPM1P06748 294 aaKnown RBP eCLIP11.61□□□□□ -0.55
SCN9A-203ENST00000409672 HSP90AA1P07900 732 aaKnown RBP11.61□□□□□ -0.55
SCN9A-203ENST00000409672 CDK11AQ9UQ88 783 aaPredicted RBP11.57□□□□□ -0.56
SCN9A-203ENST00000409672 TPRNQ4KMQ1 711 aa11.55□□□□□ -0.56
SCN9A-203ENST00000409672 ARID4BQ4LE39 1312 aaPredicted RBP11.54□□□□□ -0.56
SCN9A-203ENST00000409672 KDM2AQ9Y2K7 1162 aa11.51□□□□□ -0.57
SCN9A-203ENST00000409672 NPHP1O15259 732 aa11.51□□□□□ -0.57
SCN9A-203ENST00000409672 SENP3-EIF4A1A0A087X0R7 540 aa11.5□□□□□ -0.57
SCN9A-203ENST00000409672 LMOD2Q6P5Q4 547 aa11.49□□□□□ -0.57
SCN9A-203ENST00000409672 CDK11BP21127 795 aaKnown RBP11.48□□□□□ -0.57
SCN9A-203ENST00000409672 CHIC2Q9UKJ5 165 aa11.47□□□□□ -0.57
SCN9A-203ENST00000409672 TRHP20396 242 aaPredicted RBP11.47□□□□□ -0.57
SCN9A-203ENST00000409672 FAM9BQ8IZU0 186 aa11.46□□□□□ -0.58
SCN9A-203ENST00000409672 EIF5BO60841 1220 aaKnown RBP11.44□□□□□ -0.58
SCN9A-203ENST00000409672 KCNH8Q96L42 1107 aa11.44□□□□□ -0.58
SCN9A-203ENST00000409672 GTF3C3Q9Y5Q9 886 aa11.41□□□□□ -0.58
SCN9A-203ENST00000409672 PPP1R15AO75807 674 aaPredicted RBP11.41□□□□□ -0.58
SCN9A-203ENST00000409672 PPM1GO15355 546 aaPredicted RBP11.41□□□□□ -0.58
SCN9A-203ENST00000409672 ANP32BQ92688 251 aaKnown RBP11.4□□□□□ -0.58
SCN9A-203ENST00000409672 AMER1Q5JTC6 1135 aaPredicted RBP11.4□□□□□ -0.58
SCN9A-203ENST00000409672 ANP32AP39687 249 aaKnown RBP11.39□□□□□ -0.59
SCN9A-203ENST00000409672 TMC1Q8TDI8 760 aa11.36□□□□□ -0.59
SCN9A-203ENST00000409672 HIRIP3Q9BW71 556 aaPredicted RBP11.35□□□□□ -0.59
SCN9A-203ENST00000409672 NBR1Q14596 966 aa11.35□□□□□ -0.59
SCN9A-203ENST00000409672 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.33□□□□□ -0.6
SCN9A-203ENST00000409672 UPF2Q9HAU5 1272 aaKnown RBP11.33□□□□□ -0.6
SCN9A-203ENST00000409672 LAS1LQ9Y4W2 734 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms