RNA–Protein interactions for RNA: ENST00000358544.6

VPS13B-203, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13B, Length 14,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-203ENST00000358544 PELP1Q8IZL8 1130 aaKnown RBP10.13□□□□□ -0.79
VPS13B-203ENST00000358544 MYT1Q01538 1121 aa10.02□□□□□ -0.8
VPS13B-203ENST00000358544 SUPT5HO00267 1087 aaKnown RBP9.6□□□□□ -0.87
VPS13B-203ENST00000358544 CENPBP07199 599 aaPredicted RBP9.58□□□□□ -0.88
VPS13B-203ENST00000358544 PCGF6Q9BYE7 350 aa9.57□□□□□ -0.88
VPS13B-203ENST00000358544 ZEB1P37275 1124 aaPredicted RBP9.49□□□□□ -0.89
VPS13B-203ENST00000358544 HRCP23327 699 aa9.46□□□□□ -0.9
VPS13B-203ENST00000358544 DCAF8L2P0C7V8 631 aa9.44□□□□□ -0.9
VPS13B-203ENST00000358544 ERICH6Q7L0X2 663 aa9.4□□□□□ -0.9
VPS13B-203ENST00000358544 SHROOM4Q9ULL8 1493 aa9.34□□□□□ -0.91
VPS13B-203ENST00000358544 CCER1Q8TC90 406 aaPredicted RBP9.31□□□□□ -0.92
VPS13B-203ENST00000358544 NISCHQ9Y2I1 1504 aa9.24□□□□□ -0.93
VPS13B-203ENST00000358544 YTHDC1Q96MU7 727 aaKnown RBP9.24□□□□□ -0.93
VPS13B-203ENST00000358544 EHMT2Q96KQ7 1210 aa9.21□□□□□ -0.94
VPS13B-203ENST00000358544 NEFLP07196 543 aa9.18□□□□□ -0.94
VPS13B-203ENST00000358544 PPARGC1BQ86YN6 1023 aaKnown RBP9.17□□□□□ -0.94
VPS13B-203ENST00000358544 TTBK1Q5TCY1 1321 aaPredicted RBP9.16□□□□□ -0.94
VPS13B-203ENST00000358544 TRIM26Q12899 539 aaPredicted RBP9.08□□□□□ -0.96
VPS13B-203ENST00000358544 APLP2Q06481 763 aa9.07□□□□□ -0.96
VPS13B-203ENST00000358544 FAM9AQ8IZU1 332 aaPredicted RBP9.03□□□□□ -0.96
VPS13B-203ENST00000358544 GTF3C3Q9Y5Q9 886 aa8.99□□□□□ -0.97
VPS13B-203ENST00000358544 ACIN1Q9UKV3 1341 aaKnown RBP8.94□□□□□ -0.98
VPS13B-203ENST00000358544 RTL5Q5HYW3 569 aaPredicted RBP8.93□□□□□ -0.98
VPS13B-203ENST00000358544 DIEXFQ68CQ4 756 aaKnown RBP8.89□□□□□ -0.99
VPS13B-203ENST00000358544 TRIM41Q8WV44 630 aa8.85□□□□□ -0.99
VPS13B-203ENST00000358544 DAXXQ9UER7 740 aaPredicted RBP8.85□□□□□ -0.99
VPS13B-203ENST00000358544 CHIC1Q5VXU3 224 aa8.83□□□□□ -1
VPS13B-203ENST00000358544 SCAF1Q9H7N4 1312 aaKnown RBP8.83□□□□□ -1
VPS13B-203ENST00000358544 BCANQ96GW7 911 aa8.79□□□□□ -1
VPS13B-203ENST00000358544 LOC105371045A0A1W2PR82 267 aa8.74□□□□□ -1.01
VPS13B-203ENST00000358544 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.74□□□□□ -1.01
VPS13B-203ENST00000358544 CLSPNQ9HAW4 1339 aa8.73□□□□□ -1.01
VPS13B-203ENST00000358544 UBTFP17480 764 aaKnown RBP8.71□□□□□ -1.02
VPS13B-203ENST00000358544 MYT1LQ9UL68 1186 aa8.7□□□□□ -1.02
VPS13B-203ENST00000358544 ZNF316A6NFI3 1004 aaPredicted RBP8.7□□□□□ -1.02
VPS13B-203ENST00000358544 NEUROD1Q13562 356 aa8.68□□□□□ -1.02
VPS13B-203ENST00000358544 RANGAP1P46060 587 aaPredicted RBP8.66□□□□□ -1.02
VPS13B-203ENST00000358544 BCL11AQ9H165 835 aa8.65□□□□□ -1.02
VPS13B-203ENST00000358544 CDK11AQ9UQ88 783 aaPredicted RBP8.64□□□□□ -1.03
VPS13B-203ENST00000358544 EIF5BO60841 1220 aaKnown RBP8.63□□□□□ -1.03
VPS13B-203ENST00000358544 ANP32EQ9BTT0 268 aa8.63□□□□□ -1.03
VPS13B-203ENST00000358544 HNRNPUL2Q1KMD3 747 aaKnown RBP8.6□□□□□ -1.03
VPS13B-203ENST00000358544 GLIPR1L2Q4G1C9 344 aa8.57□□□□□ -1.04
VPS13B-203ENST00000358544 ANP32AP39687 249 aaKnown RBP8.56□□□□□ -1.04
VPS13B-203ENST00000358544 DCAF1Q9Y4B6 1507 aa8.54□□□□□ -1.04
VPS13B-203ENST00000358544 ANP32CO43423 234 aa8.49□□□□□ -1.05
VPS13B-203ENST00000358544 NBR1Q14596 966 aa8.46□□□□□ -1.05
VPS13B-203ENST00000358544 FKBP8Q14318 412 aa8.46□□□□□ -1.06
VPS13B-203ENST00000358544 ITGAEP38570 1179 aa8.45□□□□□ -1.06
VPS13B-203ENST00000358544 POLR3GLQ9BT43 218 aa8.45□□□□□ -1.06
VPS13B-203ENST00000358544 ATP1B4Q9UN42 357 aaPredicted RBP8.45□□□□□ -1.06
VPS13B-203ENST00000358544 NPM2Q86SE8 214 aaKnown RBP8.4□□□□□ -1.06
VPS13B-203ENST00000358544 MIER1Q8N108 512 aa8.38□□□□□ -1.07
VPS13B-203ENST00000358544 CNGB1Q14028 1251 aaPredicted RBP8.36□□□□□ -1.07
VPS13B-203ENST00000358544 CSRNP3Q8WYN3 585 aa8.34□□□□□ -1.07
VPS13B-203ENST00000358544 ZBTB47Q9UFB7 747 aaPredicted RBP8.34□□□□□ -1.07
VPS13B-203ENST00000358544 NEFMP07197 916 aa8.34□□□□□ -1.07
VPS13B-203ENST00000358544 DEKP35659 375 aaKnown RBP8.33□□□□□ -1.08
VPS13B-203ENST00000358544 ANP32BQ92688 251 aaKnown RBP8.31□□□□□ -1.08
VPS13B-203ENST00000358544 SUPT16HQ9Y5B9 1047 aaKnown RBP8.3□□□□□ -1.08
VPS13B-203ENST00000358544 RTN4Q9NQC3 1192 aaKnown RBP8.28□□□□□ -1.08
VPS13B-203ENST00000358544 GON4LQ3T8J9 2241 aa8.27□□□□□ -1.08
VPS13B-203ENST00000358544 CCDC180Q9P1Z9 1646 aa8.26□□□□□ -1.09
VPS13B-203ENST00000358544 CCDC136Q96JN2 1154 aa8.26□□□□□ -1.09
VPS13B-203ENST00000358544 ERICH6BQ5W0A0 696 aa8.25□□□□□ -1.09
VPS13B-203ENST00000358544 NOP58Q9Y2X3 529 aaKnown RBP8.24□□□□□ -1.09
VPS13B-203ENST00000358544 HNRNPUQ00839 825 aaKnown RBP eCLIP8.23□□□□□ -1.09
VPS13B-203ENST00000358544 NAP1L5Q96NT1 182 aaPredicted RBP8.22□□□□□ -1.09
VPS13B-203ENST00000358544 FAM50AQ14320 339 aaKnown RBP8.22□□□□□ -1.09
VPS13B-203ENST00000358544 IRX6P78412 446 aaPredicted RBP8.21□□□□□ -1.09
VPS13B-203ENST00000358544 TRIM52Q96A61 297 aa8.21□□□□□ -1.09
VPS13B-203ENST00000358544 DDRGK1Q96HY6 314 aa8.21□□□□□ -1.09
VPS13B-203ENST00000358544 TSHZ2Q9NRE2 1034 aa8.2□□□□□ -1.1
VPS13B-203ENST00000358544 MYO15BQ96JP2 1530 aa8.2□□□□□ -1.1
VPS13B-203ENST00000358544 PRKCSHP14314 528 aaPredicted RBP8.2□□□□□ -1.1
VPS13B-203ENST00000358544 CANXP27824 592 aaKnown RBP8.2□□□□□ -1.1
VPS13B-203ENST00000358544 LAS1LQ9Y4W2 734 aaKnown RBP8.2□□□□□ -1.1
VPS13B-203ENST00000358544 ARXQ96QS3 562 aa8.2□□□□□ -1.1
VPS13B-203ENST00000358544 TNNT2P45379 298 aaPredicted RBP8.19□□□□□ -1.1
VPS13B-203ENST00000358544 DDX10Q13206 875 aaKnown RBP8.19□□□□□ -1.1
VPS13B-203ENST00000358544 PPM1GO15355 546 aaPredicted RBP8.19□□□□□ -1.1
VPS13B-203ENST00000358544 RBM19Q9Y4C8 960 aaKnown RBP8.17□□□□□ -1.1
VPS13B-203ENST00000358544 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.15□□□□□ -1.11
VPS13B-203ENST00000358544 HSP90AA1P07900 732 aaKnown RBP8.15□□□□□ -1.11
VPS13B-203ENST00000358544 UPF2Q9HAU5 1272 aaKnown RBP8.15□□□□□ -1.11
VPS13B-203ENST00000358544 PPP4R2Q9NY27 417 aa8.14□□□□□ -1.11
VPS13B-203ENST00000358544 ZNF326Q5BKZ1 582 aaKnown RBP8.14□□□□□ -1.11
VPS13B-203ENST00000358544 MRS2Q9HD23 443 aa8.12□□□□□ -1.11
VPS13B-203ENST00000358544 BECN1Q14457 450 aa8.11□□□□□ -1.11
VPS13B-203ENST00000358544 FAM9BQ8IZU0 186 aa8.11□□□□□ -1.11
VPS13B-203ENST00000358544 TONSLQ96HA7 1378 aa8.08□□□□□ -1.12
VPS13B-203ENST00000358544 L1TD1Q5T7N2 865 aaKnown RBP8.07□□□□□ -1.12
VPS13B-203ENST00000358544 TRIM44Q96DX7 344 aaPredicted RBP8.06□□□□□ -1.12
VPS13B-203ENST00000358544 RSPH6AQ9H0K4 717 aa8.06□□□□□ -1.12
VPS13B-203ENST00000358544 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.06□□□□□ -1.12
VPS13B-203ENST00000358544 NCLP19338 710 aaKnown RBP8.05□□□□□ -1.12
VPS13B-203ENST00000358544 CDK11BP21127 795 aaKnown RBP8.05□□□□□ -1.12
VPS13B-203ENST00000358544 SLC4A1APQ9BWU0 796 aaKnown RBP8.05□□□□□ -1.12
VPS13B-203ENST00000358544 PTMAP06454 111 aaKnown RBP8.03□□□□□ -1.12
VPS13B-203ENST00000358544 GOLGA6L22H0YM25 854 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms