RNA–Protein interactions for RNA: ENST00000340001.8

ABCA9-201, Transcript of ATP binding cassette subfamily A member 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ABCA9, Length 6,514 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA9-201ENST00000340001 DCAF8L2P0C7V8 631 aa13.23□□□□□ -0.29
ABCA9-201ENST00000340001 EHMT2Q96KQ7 1210 aa12.43□□□□□ -0.42
ABCA9-201ENST00000340001 SUPT5HO00267 1087 aaKnown RBP12.1□□□□□ -0.47
ABCA9-201ENST00000340001 SHROOM4Q9ULL8 1493 aa12.02□□□□□ -0.49
ABCA9-201ENST00000340001 TTBK1Q5TCY1 1321 aaPredicted RBP11.86□□□□□ -0.51
ABCA9-201ENST00000340001 RANGAP1P46060 587 aaPredicted RBP11.79□□□□□ -0.52
ABCA9-201ENST00000340001 NISCHQ9Y2I1 1504 aa11.79□□□□□ -0.52
ABCA9-201ENST00000340001 ATP1B4Q9UN42 357 aaPredicted RBP11.65□□□□□ -0.54
ABCA9-201ENST00000340001 CHIC1Q5VXU3 224 aa11.6□□□□□ -0.55
ABCA9-201ENST00000340001 FAM9AQ8IZU1 332 aaPredicted RBP11.51□□□□□ -0.57
ABCA9-201ENST00000340001 APLP2Q06481 763 aa11.46□□□□□ -0.58
ABCA9-201ENST00000340001 MYT1LQ9UL68 1186 aa11.45□□□□□ -0.58
ABCA9-201ENST00000340001 PCGF6Q9BYE7 350 aa11.37□□□□□ -0.59
ABCA9-201ENST00000340001 CNGB1Q14028 1251 aaPredicted RBP11.3□□□□□ -0.6
ABCA9-201ENST00000340001 MYT1Q01538 1121 aa11.23□□□□□ -0.61
ABCA9-201ENST00000340001 POLR3GLQ9BT43 218 aa11.19□□□□□ -0.62
ABCA9-201ENST00000340001 PPARGC1BQ86YN6 1023 aaKnown RBP11.17□□□□□ -0.62
ABCA9-201ENST00000340001 PELP1Q8IZL8 1130 aaKnown RBP11.17□□□□□ -0.62
ABCA9-201ENST00000340001 ERICH6Q7L0X2 663 aa11.16□□□□□ -0.62
ABCA9-201ENST00000340001 SLC4A1APQ9BWU0 796 aaKnown RBP11.16□□□□□ -0.62
ABCA9-201ENST00000340001 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.14□□□□□ -0.63
ABCA9-201ENST00000340001 HNRNPUL2Q1KMD3 747 aaKnown RBP11.14□□□□□ -0.63
ABCA9-201ENST00000340001 PLPPR3Q6T4P5 718 aa11.06□□□□□ -0.64
ABCA9-201ENST00000340001 YTHDC1Q96MU7 727 aaKnown RBP11.05□□□□□ -0.64
ABCA9-201ENST00000340001 CCER1Q8TC90 406 aaPredicted RBP11.04□□□□□ -0.64
ABCA9-201ENST00000340001 TRIM41Q8WV44 630 aa11.02□□□□□ -0.65
ABCA9-201ENST00000340001 BCL11AQ9H165 835 aa10.99□□□□□ -0.65
ABCA9-201ENST00000340001 ITGAEP38570 1179 aa10.97□□□□□ -0.65
ABCA9-201ENST00000340001 SLC24A1O60721 1099 aa10.95□□□□□ -0.66
ABCA9-201ENST00000340001 UBTFP17480 764 aaKnown RBP10.93□□□□□ -0.66
ABCA9-201ENST00000340001 LOC105371045A0A1W2PR82 267 aa10.84□□□□□ -0.67
ABCA9-201ENST00000340001 CENPBP07199 599 aaPredicted RBP10.84□□□□□ -0.67
ABCA9-201ENST00000340001 BCANQ96GW7 911 aa10.81□□□□□ -0.68
ABCA9-201ENST00000340001 ZEB1P37275 1124 aaPredicted RBP10.74□□□□□ -0.69
ABCA9-201ENST00000340001 PLEKHG5O94827 1062 aa10.71□□□□□ -0.69
ABCA9-201ENST00000340001 NEFLP07196 543 aa10.7□□□□□ -0.7
ABCA9-201ENST00000340001 DAXXQ9UER7 740 aaPredicted RBP10.69□□□□□ -0.7
ABCA9-201ENST00000340001 A0A0G2JS52 829 aa10.69□□□□□ -0.7
ABCA9-201ENST00000340001 FBLN2P98095 1184 aa10.68□□□□□ -0.7
ABCA9-201ENST00000340001 TRIM26Q12899 539 aaPredicted RBP10.65□□□□□ -0.7
ABCA9-201ENST00000340001 SENP3Q9H4L4 574 aaPredicted RBP10.63□□□□□ -0.71
ABCA9-201ENST00000340001 HRCP23327 699 aa10.63□□□□□ -0.71
ABCA9-201ENST00000340001 CLSPNQ9HAW4 1339 aa10.61□□□□□ -0.71
ABCA9-201ENST00000340001 SCAF1Q9H7N4 1312 aaKnown RBP10.59□□□□□ -0.71
ABCA9-201ENST00000340001 ARID3CA6NKF2 412 aa10.59□□□□□ -0.71
ABCA9-201ENST00000340001 ZNF326Q5BKZ1 582 aaKnown RBP10.54□□□□□ -0.72
ABCA9-201ENST00000340001 TRIM52Q96A61 297 aa10.44□□□□□ -0.74
ABCA9-201ENST00000340001 PABPN1Q86U42 306 aaKnown RBP eCLIP10.42□□□□□ -0.74
ABCA9-201ENST00000340001 ZBTB7CA1YPR0 619 aa10.42□□□□□ -0.74
ABCA9-201ENST00000340001 ZNF316A6NFI3 1004 aaPredicted RBP10.41□□□□□ -0.74
ABCA9-201ENST00000340001 FAM50AQ14320 339 aaKnown RBP10.4□□□□□ -0.74
ABCA9-201ENST00000340001 TULP1O00294 542 aaPredicted RBP10.4□□□□□ -0.75
ABCA9-201ENST00000340001 NEUROD1Q13562 356 aa10.39□□□□□ -0.75
ABCA9-201ENST00000340001 DIEXFQ68CQ4 756 aaKnown RBP10.39□□□□□ -0.75
ABCA9-201ENST00000340001 ESF1Q9H501 851 aaKnown RBP10.38□□□□□ -0.75
ABCA9-201ENST00000340001 ZBTB47Q9UFB7 747 aaPredicted RBP10.36□□□□□ -0.75
ABCA9-201ENST00000340001 CHGAP10645 457 aaKnown RBP10.36□□□□□ -0.75
ABCA9-201ENST00000340001 NCBP3Q53F19 620 aaKnown RBP10.36□□□□□ -0.75
ABCA9-201ENST00000340001 ABCC9O60706 1549 aa10.34□□□□□ -0.75
ABCA9-201ENST00000340001 STAG3Q9UJ98 1225 aa10.33□□□□□ -0.76
ABCA9-201ENST00000340001 GTF3C3Q9Y5Q9 886 aa10.28□□□□□ -0.76
ABCA9-201ENST00000340001 ZNF777Q9ULD5 760 aaPredicted RBP10.28□□□□□ -0.76
ABCA9-201ENST00000340001 CANXP27824 592 aaKnown RBP10.27□□□□□ -0.77
ABCA9-201ENST00000340001 P3H3Q8IVL6 736 aa10.26□□□□□ -0.77
ABCA9-201ENST00000340001 ARXQ96QS3 562 aa10.26□□□□□ -0.77
ABCA9-201ENST00000340001 C14orf37Q86TY3 774 aa10.24□□□□□ -0.77
ABCA9-201ENST00000340001 NEFMP07197 916 aa10.18□□□□□ -0.78
ABCA9-201ENST00000340001 TAOK2Q9UL54 1235 aa10.17□□□□□ -0.78
ABCA9-201ENST00000340001 HAP1P54257 671 aaPredicted RBP10.17□□□□□ -0.78
ABCA9-201ENST00000340001 SALL2Q9Y467 1007 aaPredicted RBP10.14□□□□□ -0.79
ABCA9-201ENST00000340001 RTL5Q5HYW3 569 aaPredicted RBP10.12□□□□□ -0.79
ABCA9-201ENST00000340001 TRHP20396 242 aaPredicted RBP10.11□□□□□ -0.79
ABCA9-201ENST00000340001 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.09□□□□□ -0.79
ABCA9-201ENST00000340001 AMER1Q5JTC6 1135 aaPredicted RBP10.08□□□□□ -0.8
ABCA9-201ENST00000340001 SCRIBQ14160 1630 aa10.08□□□□□ -0.8
ABCA9-201ENST00000340001 ARID4BQ4LE39 1312 aaPredicted RBP10.08□□□□□ -0.8
ABCA9-201ENST00000340001 ANP32CO43423 234 aa10.08□□□□□ -0.8
ABCA9-201ENST00000340001 LMOD2Q6P5Q4 547 aa10.08□□□□□ -0.8
ABCA9-201ENST00000340001 NPM2Q86SE8 214 aaKnown RBP10.08□□□□□ -0.8
ABCA9-201ENST00000340001 NPHP1O15259 732 aa10.07□□□□□ -0.8
ABCA9-201ENST00000340001 NPM1P06748 294 aaKnown RBP eCLIP10.07□□□□□ -0.8
ABCA9-201ENST00000340001 TPRNQ4KMQ1 711 aa10.06□□□□□ -0.8
ABCA9-201ENST00000340001 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.05□□□□□ -0.8
ABCA9-201ENST00000340001 ACIN1Q9UKV3 1341 aaKnown RBP10□□□□□ -0.81
ABCA9-201ENST00000340001 SENP3-EIF4A1A0A087X0R7 540 aa9.99□□□□□ -0.81
ABCA9-201ENST00000340001 CDK11AQ9UQ88 783 aaPredicted RBP9.99□□□□□ -0.81
ABCA9-201ENST00000340001 HIRIP3Q9BW71 556 aaPredicted RBP9.99□□□□□ -0.81
ABCA9-201ENST00000340001 HSP90AA1P07900 732 aaKnown RBP9.97□□□□□ -0.81
ABCA9-201ENST00000340001 CDK11BP21127 795 aaKnown RBP9.96□□□□□ -0.81
ABCA9-201ENST00000340001 FKBP8Q14318 412 aa9.96□□□□□ -0.82
ABCA9-201ENST00000340001 MYO15BQ96JP2 1530 aa9.93□□□□□ -0.82
ABCA9-201ENST00000340001 IRX6P78412 446 aaPredicted RBP9.93□□□□□ -0.82
ABCA9-201ENST00000340001 DDX10Q13206 875 aaKnown RBP9.93□□□□□ -0.82
ABCA9-201ENST00000340001 CSRNP3Q8WYN3 585 aa9.93□□□□□ -0.82
ABCA9-201ENST00000340001 FAM9BQ8IZU0 186 aa9.92□□□□□ -0.82
ABCA9-201ENST00000340001 CHIC2Q9UKJ5 165 aa9.92□□□□□ -0.82
ABCA9-201ENST00000340001 CLSTN1O94985 981 aa9.92□□□□□ -0.82
ABCA9-201ENST00000340001 KCNH8Q96L42 1107 aa9.91□□□□□ -0.82
ABCA9-201ENST00000340001 PPP1R15AO75807 674 aaPredicted RBP9.91□□□□□ -0.82
ABCA9-201ENST00000340001 KDM2AQ9Y2K7 1162 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms