Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RNA5SP413-201ENST00000516373 109 ntBASIC15.73■□□□□ 0.11
FOXA2Q9Y261 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC15.73■□□□□ 0.11
FOXA2Q9Y261 PNMA6B-201ENST00000538162 1200 ntBASIC15.73■□□□□ 0.11
FOXA2Q9Y261 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC15.73■□□□□ 0.11
FOXA2Q9Y261 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA2Q9Y261 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA2Q9Y261 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA2Q9Y261 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC15.73■□□□□ 0.11
FOXA2Q9Y261 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA2Q9Y261 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC15.73■□□□□ 0.11
FOXA2Q9Y261 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC15.73■□□□□ 0.11
FOXA2Q9Y261 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA2Q9Y261 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
FOXA2Q9Y261 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC15.73■□□□□ 0.11
FOXA2Q9Y261 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC15.73■□□□□ 0.11
FOXA2Q9Y261 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 AC004408.2-201ENST00000623613 2777 ntBASIC15.72■□□□□ 0.11
FOXA2Q9Y261 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 AC116351.2-201ENST00000606540 1585 ntBASIC15.72■□□□□ 0.11
FOXA2Q9Y261 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 REXO2-208ENST00000539754 791 ntTSL 2 BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 AC005829.2-201ENST00000571422 1056 ntBASIC15.72■□□□□ 0.11
FOXA2Q9Y261 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA2Q9Y261 AC018553.1-201ENST00000616682 1458 ntBASIC15.71■□□□□ 0.11
FOXA2Q9Y261 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 RER1-204ENST00000378518 522 ntTSL 3 BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
FOXA2Q9Y261 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
FOXA2Q9Y261 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 OR2A1-AS1-207ENST00000486094 819 ntBASIC15.7■□□□□ 0.1
FOXA2Q9Y261 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 DENND3-207ENST00000518347 850 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms