Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
AP4E1Q9UPM8 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
AP4E1Q9UPM8 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
AP4E1Q9UPM8 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
AP4E1Q9UPM8 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.21■□□□□ 0.83
AP4E1Q9UPM8 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
AP4E1Q9UPM8 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
AP4E1Q9UPM8 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
AP4E1Q9UPM8 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.21■□□□□ 0.83
AP4E1Q9UPM8 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
AP4E1Q9UPM8 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.21■□□□□ 0.83
AP4E1Q9UPM8 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 TSPY20P-201ENST00000450910 630 ntBASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 AC005332.7-201ENST00000614046 2005 ntBASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
AP4E1Q9UPM8 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 FAM201B-201ENST00000458407 597 ntBASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 RN7SL471P-201ENST00000580476 299 ntBASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 ZNF815P-204ENST00000434898 1737 ntBASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.19■□□□□ 0.82
AP4E1Q9UPM8 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 AC004264.1-201ENST00000608354 794 ntBASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
AP4E1Q9UPM8 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
AP4E1Q9UPM8 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms