Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 AP000974.1-201ENST00000623909 2387 ntBASIC17.36■□□□□ 0.37
VSX1Q9NZR4 AC087289.5-201ENST00000586076 3175 ntBASIC17.36■□□□□ 0.37
VSX1Q9NZR4 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
VSX1Q9NZR4 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 AL109923.1-201ENST00000618799 583 ntBASIC17.35■□□□□ 0.37
VSX1Q9NZR4 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.35■□□□□ 0.37
VSX1Q9NZR4 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.34■□□□□ 0.37
VSX1Q9NZR4 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.34■□□□□ 0.37
VSX1Q9NZR4 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 AC092666.2-201ENST00000613287 246 ntBASIC17.34■□□□□ 0.37
VSX1Q9NZR4 AC120498.8-201ENST00000614275 531 ntBASIC17.34■□□□□ 0.37
VSX1Q9NZR4 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
VSX1Q9NZR4 AC133041.1-202ENST00000642053 222 ntBASIC17.34■□□□□ 0.37
VSX1Q9NZR4 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.33■□□□□ 0.37
VSX1Q9NZR4 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.33■□□□□ 0.37
VSX1Q9NZR4 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
VSX1Q9NZR4 ZNF815P-204ENST00000434898 1737 ntBASIC17.33■□□□□ 0.37
VSX1Q9NZR4 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
VSX1Q9NZR4 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VSX1Q9NZR4 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.33■□□□□ 0.37
VSX1Q9NZR4 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.33■□□□□ 0.37
VSX1Q9NZR4 AP006587.1-201ENST00000534129 1502 ntBASIC17.33■□□□□ 0.37
VSX1Q9NZR4 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VSX1Q9NZR4 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VSX1Q9NZR4 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VSX1Q9NZR4 AC069152.1-201ENST00000438030 544 ntBASIC17.33■□□□□ 0.36
VSX1Q9NZR4 YBX1P10-201ENST00000444752 975 ntBASIC17.33■□□□□ 0.36
VSX1Q9NZR4 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.33■□□□□ 0.36
VSX1Q9NZR4 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms