Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 AC141586.3-201ENST00000562166 1838 ntBASIC19.42■□□□□ 0.7
TREX1Q9NSU2 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 MTDHP1-201ENST00000605323 784 ntBASIC19.42■□□□□ 0.7
TREX1Q9NSU2 AC069544.1-201ENST00000609399 999 ntBASIC19.42■□□□□ 0.7
TREX1Q9NSU2 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TREX1Q9NSU2 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 AC233263.1-201ENST00000578059 224 ntBASIC19.41■□□□□ 0.7
TREX1Q9NSU2 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 LINC01465-201ENST00000408887 1940 ntBASIC19.41■□□□□ 0.7
TREX1Q9NSU2 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
TREX1Q9NSU2 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 PRKY-204ENST00000533551 1019 ntBASIC19.4■□□□□ 0.7
TREX1Q9NSU2 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.4■□□□□ 0.7
TREX1Q9NSU2 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TREX1Q9NSU2 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TREX1Q9NSU2 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
TREX1Q9NSU2 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
TREX1Q9NSU2 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
TREX1Q9NSU2 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TREX1Q9NSU2 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
TREX1Q9NSU2 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TREX1Q9NSU2 TNXA-203ENST00000507684 2038 ntBASIC19.39■□□□□ 0.69
TREX1Q9NSU2 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
TREX1Q9NSU2 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms