Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIME1Q9H400 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LIME1Q9H400 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.33
LIME1Q9H400 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIME1Q9H400 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIME1Q9H400 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIME1Q9H400 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
LIME1Q9H400 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIME1Q9H400 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.08■□□□□ 0.32
LIME1Q9H400 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LIME1Q9H400 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.32
LIME1Q9H400 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.08■□□□□ 0.32
LIME1Q9H400 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
LIME1Q9H400 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
LIME1Q9H400 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIME1Q9H400 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.08■□□□□ 0.32
LIME1Q9H400 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.08■□□□□ 0.32
LIME1Q9H400 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.08■□□□□ 0.32
LIME1Q9H400 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.08■□□□□ 0.32
LIME1Q9H400 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
LIME1Q9H400 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
LIME1Q9H400 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.08■□□□□ 0.32
LIME1Q9H400 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
LIME1Q9H400 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIME1Q9H400 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIME1Q9H400 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIME1Q9H400 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
LIME1Q9H400 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIME1Q9H400 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
LIME1Q9H400 STAC-204ENST00000457375 1366 ntTSL 2 BASIC17.07■□□□□ 0.32
LIME1Q9H400 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIME1Q9H400 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIME1Q9H400 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIME1Q9H400 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.07■□□□□ 0.32
LIME1Q9H400 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.07■□□□□ 0.32
LIME1Q9H400 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIME1Q9H400 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
LIME1Q9H400 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIME1Q9H400 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
LIME1Q9H400 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.07■□□□□ 0.32
LIME1Q9H400 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.07■□□□□ 0.32
LIME1Q9H400 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC17.07■□□□□ 0.32
LIME1Q9H400 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.07■□□□□ 0.32
LIME1Q9H400 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.07■□□□□ 0.32
LIME1Q9H400 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.07■□□□□ 0.32
LIME1Q9H400 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIME1Q9H400 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIME1Q9H400 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIME1Q9H400 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC17.07■□□□□ 0.32
LIME1Q9H400 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIME1Q9H400 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIME1Q9H400 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIME1Q9H400 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.06■□□□□ 0.32
LIME1Q9H400 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIME1Q9H400 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIME1Q9H400 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIME1Q9H400 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.06■□□□□ 0.32
LIME1Q9H400 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIME1Q9H400 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.06■□□□□ 0.32
LIME1Q9H400 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC17.06■□□□□ 0.32
LIME1Q9H400 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIME1Q9H400 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIME1Q9H400 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.06■□□□□ 0.32
LIME1Q9H400 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIME1Q9H400 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.06■□□□□ 0.32
LIME1Q9H400 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
LIME1Q9H400 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
LIME1Q9H400 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.06■□□□□ 0.32
LIME1Q9H400 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.06■□□□□ 0.32
LIME1Q9H400 AC006011.2-201ENST00000621313 1158 ntBASIC17.06■□□□□ 0.32
LIME1Q9H400 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIME1Q9H400 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIME1Q9H400 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIME1Q9H400 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.06■□□□□ 0.32
LIME1Q9H400 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
LIME1Q9H400 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIME1Q9H400 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
LIME1Q9H400 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LIME1Q9H400 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.06■□□□□ 0.32
LIME1Q9H400 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.06■□□□□ 0.32
LIME1Q9H400 AC087289.5-201ENST00000586076 3175 ntBASIC17.05■□□□□ 0.32
LIME1Q9H400 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.05■□□□□ 0.32
LIME1Q9H400 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.05■□□□□ 0.32
LIME1Q9H400 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIME1Q9H400 AC125437.2-201ENST00000625180 2167 ntBASIC17.05■□□□□ 0.32
LIME1Q9H400 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIME1Q9H400 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIME1Q9H400 AC092720.2-201ENST00000602388 1665 ntBASIC17.05■□□□□ 0.32
LIME1Q9H400 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIME1Q9H400 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIME1Q9H400 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.05■□□□□ 0.32
LIME1Q9H400 KSR1P1-201ENST00000446298 240 ntBASIC17.05■□□□□ 0.32
LIME1Q9H400 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.05■□□□□ 0.32
LIME1Q9H400 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIME1Q9H400 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.05■□□□□ 0.32
LIME1Q9H400 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.05■□□□□ 0.32
LIME1Q9H400 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
LIME1Q9H400 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIME1Q9H400 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
LIME1Q9H400 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms