Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VMP1Q96GC9 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VMP1Q96GC9 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VMP1Q96GC9 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VMP1Q96GC9 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VMP1Q96GC9 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
VMP1Q96GC9 KRT8P17-201ENST00000453110 1448 ntBASIC18.61■□□□□ 0.57
VMP1Q96GC9 PRORSD1P-201ENST00000295112 541 ntBASIC18.61■□□□□ 0.57
VMP1Q96GC9 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
VMP1Q96GC9 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VMP1Q96GC9 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VMP1Q96GC9 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.61■□□□□ 0.57
VMP1Q96GC9 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.61■□□□□ 0.57
VMP1Q96GC9 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.61■□□□□ 0.57
VMP1Q96GC9 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.61■□□□□ 0.57
VMP1Q96GC9 AC069544.1-201ENST00000609399 999 ntBASIC18.61■□□□□ 0.57
VMP1Q96GC9 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.61■□□□□ 0.57
VMP1Q96GC9 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VMP1Q96GC9 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VMP1Q96GC9 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.61■□□□□ 0.57
VMP1Q96GC9 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.61■□□□□ 0.57
VMP1Q96GC9 AC099778.1-201ENST00000568593 1911 ntBASIC18.61■□□□□ 0.57
VMP1Q96GC9 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
VMP1Q96GC9 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VMP1Q96GC9 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
VMP1Q96GC9 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VMP1Q96GC9 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VMP1Q96GC9 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VMP1Q96GC9 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.6■□□□□ 0.57
VMP1Q96GC9 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
VMP1Q96GC9 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VMP1Q96GC9 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VMP1Q96GC9 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VMP1Q96GC9 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VMP1Q96GC9 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VMP1Q96GC9 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VMP1Q96GC9 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.6■□□□□ 0.57
VMP1Q96GC9 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.6■□□□□ 0.57
VMP1Q96GC9 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.6■□□□□ 0.57
VMP1Q96GC9 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.6■□□□□ 0.57
VMP1Q96GC9 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VMP1Q96GC9 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.6■□□□□ 0.57
VMP1Q96GC9 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VMP1Q96GC9 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.6■□□□□ 0.57
VMP1Q96GC9 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VMP1Q96GC9 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VMP1Q96GC9 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VMP1Q96GC9 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.59■□□□□ 0.57
VMP1Q96GC9 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.59■□□□□ 0.57
VMP1Q96GC9 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VMP1Q96GC9 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VMP1Q96GC9 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
VMP1Q96GC9 AL512408.1-201ENST00000569378 2000 ntBASIC18.59■□□□□ 0.57
VMP1Q96GC9 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
VMP1Q96GC9 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.59■□□□□ 0.57
VMP1Q96GC9 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VMP1Q96GC9 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
VMP1Q96GC9 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VMP1Q96GC9 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VMP1Q96GC9 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VMP1Q96GC9 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.59■□□□□ 0.57
VMP1Q96GC9 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
VMP1Q96GC9 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.59■□□□□ 0.57
VMP1Q96GC9 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.59■□□□□ 0.57
VMP1Q96GC9 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.59■□□□□ 0.57
VMP1Q96GC9 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.59■□□□□ 0.57
VMP1Q96GC9 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.59■□□□□ 0.57
VMP1Q96GC9 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.59■□□□□ 0.57
VMP1Q96GC9 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VMP1Q96GC9 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
VMP1Q96GC9 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VMP1Q96GC9 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VMP1Q96GC9 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
VMP1Q96GC9 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VMP1Q96GC9 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.59■□□□□ 0.57
VMP1Q96GC9 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VMP1Q96GC9 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
VMP1Q96GC9 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VMP1Q96GC9 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.58■□□□□ 0.57
VMP1Q96GC9 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
VMP1Q96GC9 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.58■□□□□ 0.57
VMP1Q96GC9 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VMP1Q96GC9 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
VMP1Q96GC9 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
VMP1Q96GC9 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VMP1Q96GC9 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.58■□□□□ 0.56
VMP1Q96GC9 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
VMP1Q96GC9 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VMP1Q96GC9 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VMP1Q96GC9 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.58■□□□□ 0.56
VMP1Q96GC9 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.58■□□□□ 0.56
VMP1Q96GC9 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.58■□□□□ 0.56
VMP1Q96GC9 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VMP1Q96GC9 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VMP1Q96GC9 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VMP1Q96GC9 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
VMP1Q96GC9 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VMP1Q96GC9 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms