Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NKX2-3Q8TAU0 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
NKX2-3Q8TAU0 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC23.1■■□□□ 1.29
NKX2-3Q8TAU0 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 YBX1P10-201ENST00000444752 975 ntBASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 KRT16P5-201ENST00000455284 522 ntBASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 FDX2-207ENST00000494368 584 ntTSL 4 BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC23.09■■□□□ 1.29
NKX2-3Q8TAU0 HTR7P1-201ENST00000538670 1336 ntBASIC23.08■■□□□ 1.29
NKX2-3Q8TAU0 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NKX2-3Q8TAU0 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
NKX2-3Q8TAU0 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NKX2-3Q8TAU0 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC23.08■■□□□ 1.29
NKX2-3Q8TAU0 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NKX2-3Q8TAU0 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
NKX2-3Q8TAU0 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NKX2-3Q8TAU0 AF186192.3-201ENST00000583427 947 ntBASIC23.08■■□□□ 1.29
NKX2-3Q8TAU0 DECR2-212ENST00000627716 352 ntTSL 2 BASIC23.08■■□□□ 1.29
NKX2-3Q8TAU0 GLDC-219ENST00000640208 420 ntTSL 2 BASIC23.08■■□□□ 1.29
NKX2-3Q8TAU0 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NKX2-3Q8TAU0 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NKX2-3Q8TAU0 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC23.08■■□□□ 1.28
NKX2-3Q8TAU0 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC23.08■■□□□ 1.28
NKX2-3Q8TAU0 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC23.08■■□□□ 1.28
NKX2-3Q8TAU0 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
NKX2-3Q8TAU0 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
NKX2-3Q8TAU0 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
NKX2-3Q8TAU0 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
NKX2-3Q8TAU0 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
NKX2-3Q8TAU0 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 RPS15-203ENST00000586096 570 ntTSL 2 BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
NKX2-3Q8TAU0 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
NKX2-3Q8TAU0 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
NKX2-3Q8TAU0 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
NKX2-3Q8TAU0 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC23.06■■□□□ 1.28
NKX2-3Q8TAU0 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
NKX2-3Q8TAU0 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
NKX2-3Q8TAU0 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
NKX2-3Q8TAU0 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC23.06■■□□□ 1.28
NKX2-3Q8TAU0 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC23.06■■□□□ 1.28
NKX2-3Q8TAU0 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC23.06■■□□□ 1.28
NKX2-3Q8TAU0 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC23.06■■□□□ 1.28
NKX2-3Q8TAU0 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
NKX2-3Q8TAU0 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC23.06■■□□□ 1.28
NKX2-3Q8TAU0 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC23.06■■□□□ 1.28
NKX2-3Q8TAU0 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
NKX2-3Q8TAU0 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
NKX2-3Q8TAU0 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
NKX2-3Q8TAU0 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
NKX2-3Q8TAU0 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
NKX2-3Q8TAU0 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
NKX2-3Q8TAU0 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC23.05■■□□□ 1.28
NKX2-3Q8TAU0 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
NKX2-3Q8TAU0 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
NKX2-3Q8TAU0 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
NKX2-3Q8TAU0 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
NKX2-3Q8TAU0 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
NKX2-3Q8TAU0 AL137013.1-201ENST00000432946 1228 ntBASIC23.05■■□□□ 1.28
NKX2-3Q8TAU0 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC23.05■■□□□ 1.28
NKX2-3Q8TAU0 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
NKX2-3Q8TAU0 C1QL1P1-201ENST00000568105 661 ntBASIC23.05■■□□□ 1.28
NKX2-3Q8TAU0 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC23.05■■□□□ 1.28
NKX2-3Q8TAU0 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
NKX2-3Q8TAU0 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
NKX2-3Q8TAU0 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
NKX2-3Q8TAU0 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC23.05■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms