Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 RPS17-209ENST00000561157 1909 ntTSL 2 BASIC8.49□□□□□ -1.051e-40■■□□□ 12.3
DDX55Q8NHQ9 RPS17-207ENST00000560639 932 ntTSL 55.88□□□□□ -1.471e-40■■□□□ 12.3
DDX55Q8NHQ9 RPS17-208ENST00000561068 522 ntTSL 35.86□□□□□ -1.471e-40■■□□□ 12.3
DDX55Q8NHQ9 RPS17-202ENST00000558397 583 ntTSL 35.24□□□□□ -1.571e-40■■□□□ 12.3
DDX55Q8NHQ9 PTK2B-203ENST00000397501 4719 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.389e-7■■□□□ 12.3
DDX55Q8NHQ9 PTK2B-210ENST00000517339 3914 ntTSL 2 BASIC10.94□□□□□ -0.669e-7■■□□□ 12.3
DDX55Q8NHQ9 PTK2B-201ENST00000346049 4147 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.839e-7■■□□□ 12.3
DDX55Q8NHQ9 PTK2B-205ENST00000420218 3941 ntTSL 5 BASIC9.76□□□□□ -0.859e-7■■□□□ 12.3
DDX55Q8NHQ9 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.798e-43■■□□□ 12.2
DDX55Q8NHQ9 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC23.87■■□□□ 1.418e-43■■□□□ 12.2
DDX55Q8NHQ9 PDIA6-204ENST00000404824 2236 ntTSL 2 BASIC13.37□□□□□ -0.278e-43■■□□□ 12.2
DDX55Q8NHQ9 PDIA6-208ENST00000617249 2344 ntTSL 5 BASIC12.4□□□□□ -0.428e-43■■□□□ 12.2
DDX55Q8NHQ9 PDIA6-202ENST00000381611 2534 ntTSL 2 BASIC10.92□□□□□ -0.668e-43■■□□□ 12.2
DDX55Q8NHQ9 PDIA6-203ENST00000404371 2682 ntTSL 2 BASIC10.57□□□□□ -0.728e-43■■□□□ 12.2
DDX55Q8NHQ9 SEC62-201ENST00000337002 6568 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.11e-10■■□□□ 12.2
DDX55Q8NHQ9 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC33.87■■■■□ 3.012e-6■■□□□ 12.2
DDX55Q8NHQ9 PRKRIP1-204ENST00000469763 1642 ntTSL 528.59■■■□□ 2.172e-6■■□□□ 12.2
DDX55Q8NHQ9 PRKRIP1-207ENST00000482549 1625 ntTSL 1 (best)28.46■■■□□ 2.152e-6■■□□□ 12.2
DDX55Q8NHQ9 NECAB3-212ENST00000485976 1016 ntTSL 527.57■■■□□ 29e-11■■□□□ 12.2
DDX55Q8NHQ9 NECAB3-207ENST00000478237 827 ntTSL 227.57■■■□□ 29e-11■■□□□ 12.2
DDX55Q8NHQ9 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.922e-6■■□□□ 12.2
DDX55Q8NHQ9 NECAB3-211ENST00000485399 1373 ntTSL 225.53■■□□□ 1.689e-11■■□□□ 12.2
DDX55Q8NHQ9 ABHD5-207ENST00000486764 618 ntTSL 225.15■■□□□ 1.622e-6■■□□□ 12.2
DDX55Q8NHQ9 ABHD5-203ENST00000454293 464 ntTSL 325.1■■□□□ 1.612e-6■■□□□ 12.2
DDX55Q8NHQ9 FBRSL1-206ENST00000542306 1246 ntTSL 524.62■■□□□ 1.532e-6■■□□□ 12.2
DDX55Q8NHQ9 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC24.15■■□□□ 1.462e-6■■□□□ 12.2
DDX55Q8NHQ9 NECAB3-215ENST00000494174 859 ntTSL 524.03■■□□□ 1.449e-11■■□□□ 12.2
DDX55Q8NHQ9 TCF3-219ENST00000610756 1343 ntTSL 1 (best)23.63■■□□□ 1.372e-6■■□□□ 12.2
DDX55Q8NHQ9 SCRN2-213ENST00000584567 932 ntTSL 223.59■■□□□ 1.372e-6■■□□□ 12.2
DDX55Q8NHQ9 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.292e-6■■□□□ 12.2
DDX55Q8NHQ9 SCRN2-208ENST00000581645 1477 ntTSL 523.08■■□□□ 1.292e-6■■□□□ 12.2
DDX55Q8NHQ9 TCF3-207ENST00000586164 409 ntTSL 322.11■■□□□ 1.132e-6■■□□□ 12.2
DDX55Q8NHQ9 ABHD5-201ENST00000013894 833 ntTSL 322.01■■□□□ 1.112e-6■■□□□ 12.2
DDX55Q8NHQ9 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC21.97■■□□□ 1.112e-6■■□□□ 12.2
DDX55Q8NHQ9 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC21.81■■□□□ 1.082e-6■■□□□ 12.2
DDX55Q8NHQ9 FKBP8-205ENST00000596494 439 ntTSL 321.33■■□□□ 1.012e-12■■□□□ 12.2
DDX55Q8NHQ9 SCRN2-205ENST00000579856 952 ntTSL 521.28■■□□□ 12e-6■■□□□ 12.2
DDX55Q8NHQ9 SCRN2-209ENST00000582459 1624 ntTSL 521.05■□□□□ 0.962e-6■■□□□ 12.2
DDX55Q8NHQ9 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.952e-6■■□□□ 12.2
DDX55Q8NHQ9 HERC2-208ENST00000566635 2114 ntTSL 1 (best)20.31■□□□□ 0.842e-6■■□□□ 12.2
DDX55Q8NHQ9 SNX12-203ENST00000465030 946 ntTSL 220.14■□□□□ 0.812e-6■■□□□ 12.2
DDX55Q8NHQ9 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.35■□□□□ 0.692e-6■■□□□ 12.2
DDX55Q8NHQ9 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.669e-7■■□□□ 12.2
DDX55Q8NHQ9 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.621e-12■■□□□ 12.2
DDX55Q8NHQ9 SNX12-206ENST00000622259 661 ntTSL 5 BASIC18.89■□□□□ 0.612e-6■■□□□ 12.2
DDX55Q8NHQ9 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.572e-6■■□□□ 12.2
DDX55Q8NHQ9 TCF3-214ENST00000590605 541 ntTSL 218.58■□□□□ 0.562e-6■■□□□ 12.2
DDX55Q8NHQ9 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.539e-7■■□□□ 12.2
DDX55Q8NHQ9 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.532e-6■■□□□ 12.2
DDX55Q8NHQ9 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.492e-6■■□□□ 12.2
DDX55Q8NHQ9 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.462e-6■■□□□ 12.2
DDX55Q8NHQ9 PRKRIP1-203ENST00000468316 2045 ntTSL 1 (best)17.71■□□□□ 0.432e-6■■□□□ 12.2
DDX55Q8NHQ9 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.49e-7■■□□□ 12.2
DDX55Q8NHQ9 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC17.21■□□□□ 0.352e-6■■□□□ 12.2
DDX55Q8NHQ9 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.342e-6■■□□□ 12.2
DDX55Q8NHQ9 RECQL5-207ENST00000578865 1176 ntTSL 1 (best)16.94■□□□□ 0.32e-6■■□□□ 12.2
DDX55Q8NHQ9 PRKRIP1-206ENST00000482465 2257 ntTSL 216.92■□□□□ 0.32e-6■■□□□ 12.2
DDX55Q8NHQ9 ABHD5-204ENST00000456453 876 ntTSL 416.87■□□□□ 0.292e-6■■□□□ 12.2
DDX55Q8NHQ9 FBRSL1-203ENST00000537804 261 ntTSL 516.78■□□□□ 0.282e-6■■□□□ 12.2
DDX55Q8NHQ9 TCF3-209ENST00000586410 288 ntTSL 516.41■□□□□ 0.222e-6■■□□□ 12.2
DDX55Q8NHQ9 RECQL5-213ENST00000581825 793 ntTSL 316.3■□□□□ 0.22e-6■■□□□ 12.2
DDX55Q8NHQ9 AC073111.4-201ENST00000483664 582 ntTSL 416.29■□□□□ 0.22e-6■■□□□ 12.2
DDX55Q8NHQ9 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.112e-6■■□□□ 12.2
DDX55Q8NHQ9 HERC2-202ENST00000562136 632 ntTSL 215.73■□□□□ 0.112e-6■■□□□ 12.2
DDX55Q8NHQ9 DNAJA3-209ENST00000574393 577 ntTSL 315.72■□□□□ 0.112e-6■■□□□ 12.2
DDX55Q8NHQ9 SNX12-205ENST00000490561 862 ntTSL 1 (best)15.53■□□□□ 0.082e-6■■□□□ 12.2
DDX55Q8NHQ9 PRKRIP1-202ENST00000462601 884 ntTSL 2 BASIC15.36■□□□□ 0.052e-6■■□□□ 12.2
DDX55Q8NHQ9 NUB1-212ENST00000568733 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -02e-6■■□□□ 12.2
DDX55Q8NHQ9 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.032e-6■■□□□ 12.2
DDX55Q8NHQ9 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.092e-6■■□□□ 12.2
DDX55Q8NHQ9 FBRSL1-202ENST00000536075 208 ntTSL 514.32□□□□□ -0.122e-6■■□□□ 12.2
DDX55Q8NHQ9 FLVCR2-205ENST00000554496 441 ntTSL 314.29□□□□□ -0.122e-6■■□□□ 12.2
DDX55Q8NHQ9 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.132e-6■■□□□ 12.2
DDX55Q8NHQ9 RECQL5-205ENST00000443199 3089 ntTSL 1 (best)14.05□□□□□ -0.162e-6■■□□□ 12.2
DDX55Q8NHQ9 SNX12-207ENST00000622277 2422 ntAPPRIS P3 TSL 4 BASIC13.91□□□□□ -0.182e-6■■□□□ 12.2
DDX55Q8NHQ9 DNAJA3-212ENST00000576180 2288 ntTSL 213.79□□□□□ -0.22e-6■■□□□ 12.2
DDX55Q8NHQ9 RECQL5-204ENST00000423245 3576 ntTSL 1 (best) BASIC12.92□□□□□ -0.342e-6■■□□□ 12.2
DDX55Q8NHQ9 RECQL5-201ENST00000317905 3704 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.422e-6■■□□□ 12.2
DDX55Q8NHQ9 FLVCR2-201ENST00000238667 3632 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.432e-6■■□□□ 12.2
DDX55Q8NHQ9 FLVCR2-209ENST00000555385 218 ntTSL 412.27□□□□□ -0.452e-6■■□□□ 12.2
DDX55Q8NHQ9 RNF14-203ENST00000394514 2905 ntTSL 2 BASIC10.28□□□□□ -0.762e-6■■□□□ 12.2
DDX55Q8NHQ9 RNF14-205ENST00000394520 4235 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.852e-6■■□□□ 12.2
DDX55Q8NHQ9 RNF14-202ENST00000356143 3999 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.12e-6■■□□□ 12.2
DDX55Q8NHQ9 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.122e-6■■□□□ 12.2
DDX55Q8NHQ9 SNX12-204ENST00000483560 700 ntTSL 57.89□□□□□ -1.152e-6■■□□□ 12.2
DDX55Q8NHQ9 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.152e-6■■□□□ 12.2
DDX55Q8NHQ9 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.582e-6■■□□□ 12.2
DDX55Q8NHQ9 RNA5SP387-201ENST00000364226 106 ntBASIC4.93□□□□□ -1.622e-6■■□□□ 12.2
DDX55Q8NHQ9 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71e-12■■□□□ 12.2
DDX55Q8NHQ9 FAAP20-210ENST00000440825 855 ntTSL 333.99■■■■□ 3.031e-7■■□□□ 12.2
DDX55Q8NHQ9 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC33.02■■■□□ 2.881e-7■■□□□ 12.2
DDX55Q8NHQ9 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.631e-7■■□□□ 12.2
DDX55Q8NHQ9 FAAP20-201ENST00000378543 569 ntTSL 229.03■■■□□ 2.241e-7■■□□□ 12.2
DDX55Q8NHQ9 FAAP20-203ENST00000400918 811 ntTSL 227.41■■□□□ 1.981e-7■■□□□ 12.2
DDX55Q8NHQ9 FAAP20-206ENST00000414253 2216 ntTSL 226.1■■□□□ 1.771e-7■■□□□ 12.2
DDX55Q8NHQ9 FAAP20-209ENST00000428120 2313 ntTSL 1 (best)25.68■■□□□ 1.71e-7■■□□□ 12.2
DDX55Q8NHQ9 FAAP20-212ENST00000476803 701 ntTSL 222.33■■□□□ 1.172e-7■■□□□ 12.2
DDX55Q8NHQ9 FAAP20-205ENST00000401813 2543 ntTSL 1 (best)19.83■□□□□ 0.771e-7■■□□□ 12.2
DDX55Q8NHQ9 FAAP20-211ENST00000469733 2280 ntTSL 218.76■□□□□ 0.591e-7■■□□□ 12.2
DDX55Q8NHQ9 FAAP20-214ENST00000497675 4478 ntTSL 215.64■□□□□ 0.092e-7■■□□□ 12.2
Retrieved 100 of 15,504 protein–RNA pairs in 129.2 ms