Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC5.99□□□□□ -1.45
SYNE1Q8NF91 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 FDX2-206ENST00000492239 773 ntTSL 2 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 NME3-204ENST00000563498 920 ntTSL 2 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 PLK5-205ENST00000642079 1969 ntBASIC5.99□□□□□ -1.45
SYNE1Q8NF91 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
SYNE1Q8NF91 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
SYNE1Q8NF91 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms