Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CLRN3Q8NCR9 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 AC006333.2-201ENST00000607957 2099 ntBASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 AL118508.1-201ENST00000613502 2345 ntBASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 AC120024.1-201ENST00000562672 995 ntBASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLRN3Q8NCR9 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 AC073592.3-201ENST00000625118 1834 ntBASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 AC005703.6-201ENST00000623265 1329 ntBASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 MIR4281-201ENST00000580852 62 ntBASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 SNX5-217ENST00000606557 1087 ntBASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CLRN3Q8NCR9 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLRN3Q8NCR9 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLRN3Q8NCR9 AC103702.1-201ENST00000548801 2630 ntBASIC15.52■□□□□ 0.07
CLRN3Q8NCR9 AD000864.1-201ENST00000624076 2295 ntBASIC15.52■□□□□ 0.07
CLRN3Q8NCR9 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLRN3Q8NCR9 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLRN3Q8NCR9 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CLRN3Q8NCR9 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLRN3Q8NCR9 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.07
CLRN3Q8NCR9 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CLRN3Q8NCR9 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.52■□□□□ 0.07
CLRN3Q8NCR9 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CLRN3Q8NCR9 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 ABALON-201ENST00000629058 1903 ntBASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 AC135776.1-201ENST00000319817 2481 ntBASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 GUK1-208ENST00000366728 842 ntTSL 2 BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 AC126763.1-201ENST00000552015 2118 ntBASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 AC008764.6-201ENST00000595909 2069 ntBASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC15.51■□□□□ 0.07
CLRN3Q8NCR9 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms