Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC30.53■■■□□ 2.48
VPS8Q8N3P4 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC30.53■■■□□ 2.48
VPS8Q8N3P4 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC30.53■■■□□ 2.48
VPS8Q8N3P4 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC30.53■■■□□ 2.48
VPS8Q8N3P4 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
VPS8Q8N3P4 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
VPS8Q8N3P4 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
VPS8Q8N3P4 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC30.53■■■□□ 2.48
VPS8Q8N3P4 GLDC-219ENST00000640208 420 ntTSL 2 BASIC30.53■■■□□ 2.48
VPS8Q8N3P4 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
VPS8Q8N3P4 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC30.53■■■□□ 2.48
VPS8Q8N3P4 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
VPS8Q8N3P4 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC30.52■■■□□ 2.48
VPS8Q8N3P4 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
VPS8Q8N3P4 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC30.52■■■□□ 2.48
VPS8Q8N3P4 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
VPS8Q8N3P4 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
VPS8Q8N3P4 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC30.52■■■□□ 2.48
VPS8Q8N3P4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC30.52■■■□□ 2.48
VPS8Q8N3P4 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC30.52■■■□□ 2.48
VPS8Q8N3P4 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC30.52■■■□□ 2.48
VPS8Q8N3P4 AP000692.2-201ENST00000608391 879 ntBASIC30.52■■■□□ 2.48
VPS8Q8N3P4 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC30.52■■■□□ 2.48
VPS8Q8N3P4 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC30.52■■■□□ 2.48
VPS8Q8N3P4 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.48
VPS8Q8N3P4 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
VPS8Q8N3P4 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC30.51■■■□□ 2.48
VPS8Q8N3P4 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
VPS8Q8N3P4 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC30.51■■■□□ 2.48
VPS8Q8N3P4 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
VPS8Q8N3P4 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC30.51■■■□□ 2.47
VPS8Q8N3P4 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC30.51■■■□□ 2.47
VPS8Q8N3P4 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC30.51■■■□□ 2.47
VPS8Q8N3P4 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC30.51■■■□□ 2.47
VPS8Q8N3P4 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
VPS8Q8N3P4 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
VPS8Q8N3P4 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC30.5■■■□□ 2.47
VPS8Q8N3P4 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
VPS8Q8N3P4 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
VPS8Q8N3P4 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
VPS8Q8N3P4 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
VPS8Q8N3P4 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC30.5■■■□□ 2.47
VPS8Q8N3P4 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC30.5■■■□□ 2.47
VPS8Q8N3P4 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC30.5■■■□□ 2.47
VPS8Q8N3P4 AC097493.4-201ENST00000641197 219 ntBASIC30.5■■■□□ 2.47
VPS8Q8N3P4 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
VPS8Q8N3P4 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
VPS8Q8N3P4 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC30.5■■■□□ 2.47
VPS8Q8N3P4 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC30.5■■■□□ 2.47
VPS8Q8N3P4 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
VPS8Q8N3P4 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
VPS8Q8N3P4 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
VPS8Q8N3P4 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
VPS8Q8N3P4 BID-204ENST00000399767 2129 ntTSL 2 BASIC30.49■■■□□ 2.47
VPS8Q8N3P4 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC30.49■■■□□ 2.47
VPS8Q8N3P4 MIR1238-201ENST00000408483 83 ntBASIC30.49■■■□□ 2.47
VPS8Q8N3P4 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
VPS8Q8N3P4 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC30.49■■■□□ 2.47
VPS8Q8N3P4 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC30.49■■■□□ 2.47
VPS8Q8N3P4 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC30.49■■■□□ 2.47
VPS8Q8N3P4 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
VPS8Q8N3P4 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC30.49■■■□□ 2.47
VPS8Q8N3P4 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC30.49■■■□□ 2.47
VPS8Q8N3P4 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
VPS8Q8N3P4 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC30.48■■■□□ 2.47
VPS8Q8N3P4 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC30.48■■■□□ 2.47
VPS8Q8N3P4 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
VPS8Q8N3P4 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
VPS8Q8N3P4 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
VPS8Q8N3P4 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
VPS8Q8N3P4 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
VPS8Q8N3P4 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
VPS8Q8N3P4 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
VPS8Q8N3P4 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC30.48■■■□□ 2.47
VPS8Q8N3P4 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC30.48■■■□□ 2.47
VPS8Q8N3P4 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC30.48■■■□□ 2.47
VPS8Q8N3P4 SDHAP1-207ENST00000440850 2000 ntBASIC30.48■■■□□ 2.47
VPS8Q8N3P4 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC30.48■■■□□ 2.47
VPS8Q8N3P4 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
VPS8Q8N3P4 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
VPS8Q8N3P4 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
VPS8Q8N3P4 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC30.47■■■□□ 2.47
VPS8Q8N3P4 FAM207BP-201ENST00000447172 505 ntBASIC30.47■■■□□ 2.47
VPS8Q8N3P4 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
VPS8Q8N3P4 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC30.47■■■□□ 2.47
VPS8Q8N3P4 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC30.47■■■□□ 2.47
VPS8Q8N3P4 AC130371.2-201ENST00000619443 611 ntBASIC30.47■■■□□ 2.47
VPS8Q8N3P4 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC30.47■■■□□ 2.47
VPS8Q8N3P4 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC30.47■■■□□ 2.47
VPS8Q8N3P4 Z82202.1-201ENST00000623446 1880 ntBASIC30.47■■■□□ 2.47
VPS8Q8N3P4 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC30.47■■■□□ 2.47
VPS8Q8N3P4 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
VPS8Q8N3P4 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC30.47■■■□□ 2.47
VPS8Q8N3P4 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC30.47■■■□□ 2.47
VPS8Q8N3P4 MMP23A-201ENST00000234610 1017 ntBASIC30.47■■■□□ 2.47
VPS8Q8N3P4 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
VPS8Q8N3P4 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC30.47■■■□□ 2.47
VPS8Q8N3P4 DERL1-203ENST00000419562 918 ntTSL 2 BASIC30.47■■■□□ 2.47
VPS8Q8N3P4 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
VPS8Q8N3P4 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC30.47■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms