Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
KRT39Q6A163 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.04■□□□□ 0.96
KRT39Q6A163 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
KRT39Q6A163 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.04■□□□□ 0.96
KRT39Q6A163 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.04■□□□□ 0.96
KRT39Q6A163 ITM2C-210ENST00000620962 501 ntBASIC21.04■□□□□ 0.96
KRT39Q6A163 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.04■□□□□ 0.96
KRT39Q6A163 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
KRT39Q6A163 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
KRT39Q6A163 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
KRT39Q6A163 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.04■□□□□ 0.96
KRT39Q6A163 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
KRT39Q6A163 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.04■□□□□ 0.96
KRT39Q6A163 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
KRT39Q6A163 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
KRT39Q6A163 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
KRT39Q6A163 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.04■□□□□ 0.96
KRT39Q6A163 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
KRT39Q6A163 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.03■□□□□ 0.96
KRT39Q6A163 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
KRT39Q6A163 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
KRT39Q6A163 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.03■□□□□ 0.96
KRT39Q6A163 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.03■□□□□ 0.96
KRT39Q6A163 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
KRT39Q6A163 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
KRT39Q6A163 AC005332.7-201ENST00000614046 2005 ntBASIC21.03■□□□□ 0.96
KRT39Q6A163 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
KRT39Q6A163 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
KRT39Q6A163 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
KRT39Q6A163 ZNF815P-204ENST00000434898 1737 ntBASIC21.03■□□□□ 0.96
KRT39Q6A163 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
KRT39Q6A163 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
KRT39Q6A163 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
KRT39Q6A163 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.03■□□□□ 0.96
KRT39Q6A163 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
KRT39Q6A163 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
KRT39Q6A163 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
KRT39Q6A163 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
KRT39Q6A163 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
KRT39Q6A163 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC21.03■□□□□ 0.96
KRT39Q6A163 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT39Q6A163 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT39Q6A163 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
KRT39Q6A163 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT39Q6A163 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT39Q6A163 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC21.02■□□□□ 0.96
KRT39Q6A163 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
KRT39Q6A163 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
KRT39Q6A163 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.02■□□□□ 0.96
KRT39Q6A163 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.02■□□□□ 0.96
KRT39Q6A163 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21.02■□□□□ 0.96
KRT39Q6A163 AC110285.5-201ENST00000611501 352 ntBASIC21.02■□□□□ 0.96
KRT39Q6A163 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT39Q6A163 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT39Q6A163 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.95
KRT39Q6A163 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
KRT39Q6A163 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
KRT39Q6A163 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
KRT39Q6A163 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
KRT39Q6A163 ANKRD18DP-204ENST00000455355 1975 ntBASIC21.01■□□□□ 0.95
KRT39Q6A163 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
KRT39Q6A163 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.01■□□□□ 0.95
KRT39Q6A163 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
KRT39Q6A163 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
KRT39Q6A163 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.01■□□□□ 0.95
KRT39Q6A163 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
KRT39Q6A163 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
KRT39Q6A163 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
KRT39Q6A163 KRT18P29-201ENST00000397031 1267 ntBASIC21.01■□□□□ 0.95
KRT39Q6A163 KRT16P5-201ENST00000455284 522 ntBASIC21.01■□□□□ 0.95
KRT39Q6A163 C1QBPP2-201ENST00000528754 825 ntBASIC21.01■□□□□ 0.95
KRT39Q6A163 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
KRT39Q6A163 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
KRT39Q6A163 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
KRT39Q6A163 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
KRT39Q6A163 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.01■□□□□ 0.95
KRT39Q6A163 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC21.01■□□□□ 0.95
KRT39Q6A163 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
KRT39Q6A163 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
KRT39Q6A163 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
KRT39Q6A163 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
KRT39Q6A163 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
KRT39Q6A163 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
KRT39Q6A163 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
KRT39Q6A163 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
KRT39Q6A163 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
KRT39Q6A163 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21■□□□□ 0.95
KRT39Q6A163 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC21■□□□□ 0.95
KRT39Q6A163 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
KRT39Q6A163 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
KRT39Q6A163 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
KRT39Q6A163 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC21■□□□□ 0.95
KRT39Q6A163 C1QL1P1-201ENST00000568105 661 ntBASIC21■□□□□ 0.95
KRT39Q6A163 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21■□□□□ 0.95
KRT39Q6A163 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21■□□□□ 0.95
KRT39Q6A163 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.99■□□□□ 0.95
KRT39Q6A163 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
KRT39Q6A163 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
KRT39Q6A163 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
KRT39Q6A163 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms