Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 GALNS-213ENST00000569433 723 ntTSL 3 BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 PHGDH-210ENST00000641115 1638 ntBASIC17.36■□□□□ 0.37
CCDC58Q4VC31 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 PARP1-202ENST00000366792 553 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 AC007322.4-201ENST00000509611 723 ntBASIC17.35■□□□□ 0.37
CCDC58Q4VC31 AC010536.3-201ENST00000620306 533 ntBASIC17.35■□□□□ 0.37
CCDC58Q4VC31 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CCDC58Q4VC31 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 AC104581.1-202ENST00000635932 2618 ntBASIC17.34■□□□□ 0.37
CCDC58Q4VC31 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 MCRIP2P1-201ENST00000394346 511 ntBASIC17.34■□□□□ 0.37
CCDC58Q4VC31 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 SP2-202ENST00000613139 908 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC58Q4VC31 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC58Q4VC31 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC58Q4VC31 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC58Q4VC31 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC58Q4VC31 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.33■□□□□ 0.37
CCDC58Q4VC31 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC58Q4VC31 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC17.33■□□□□ 0.37
CCDC58Q4VC31 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.33■□□□□ 0.37
CCDC58Q4VC31 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC58Q4VC31 AC018470.1-201ENST00000624790 3129 ntBASIC17.33■□□□□ 0.37
CCDC58Q4VC31 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC58Q4VC31 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC58Q4VC31 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC58Q4VC31 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC58Q4VC31 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC58Q4VC31 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC58Q4VC31 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC58Q4VC31 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC58Q4VC31 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC58Q4VC31 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC58Q4VC31 AC090340.1-201ENST00000620778 4980 ntBASIC17.33■□□□□ 0.36
CCDC58Q4VC31 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC58Q4VC31 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC58Q4VC31 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC58Q4VC31 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CCDC58Q4VC31 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC58Q4VC31 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC58Q4VC31 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC58Q4VC31 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC58Q4VC31 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms