Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
H3F3AP84243 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
H3F3AP84243 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.42■□□□□ 0.38
H3F3AP84243 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
H3F3AP84243 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
H3F3AP84243 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.42■□□□□ 0.38
H3F3AP84243 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
H3F3AP84243 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.42■□□□□ 0.38
H3F3AP84243 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
H3F3AP84243 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
H3F3AP84243 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
H3F3AP84243 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.42■□□□□ 0.38
H3F3AP84243 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.42■□□□□ 0.38
H3F3AP84243 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
H3F3AP84243 C1QL1P1-201ENST00000568105 661 ntBASIC17.42■□□□□ 0.38
H3F3AP84243 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.42■□□□□ 0.38
H3F3AP84243 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.42■□□□□ 0.38
H3F3AP84243 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
H3F3AP84243 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
H3F3AP84243 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.42■□□□□ 0.38
H3F3AP84243 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.42■□□□□ 0.38
H3F3AP84243 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
H3F3AP84243 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
H3F3AP84243 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
H3F3AP84243 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
H3F3AP84243 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.41■□□□□ 0.38
H3F3AP84243 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
H3F3AP84243 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
H3F3AP84243 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
H3F3AP84243 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.41■□□□□ 0.38
H3F3AP84243 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
H3F3AP84243 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
H3F3AP84243 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.41■□□□□ 0.38
H3F3AP84243 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
H3F3AP84243 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.41■□□□□ 0.38
H3F3AP84243 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
H3F3AP84243 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
H3F3AP84243 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.41■□□□□ 0.38
H3F3AP84243 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.41■□□□□ 0.38
H3F3AP84243 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.41■□□□□ 0.38
H3F3AP84243 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.41■□□□□ 0.38
H3F3AP84243 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.41■□□□□ 0.38
H3F3AP84243 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.41■□□□□ 0.38
H3F3AP84243 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.41■□□□□ 0.38
H3F3AP84243 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.41■□□□□ 0.38
H3F3AP84243 FAM197Y4-202ENST00000622692 608 ntBASIC17.41■□□□□ 0.38
H3F3AP84243 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
H3F3AP84243 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.41■□□□□ 0.38
H3F3AP84243 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
H3F3AP84243 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
H3F3AP84243 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.41■□□□□ 0.38
H3F3AP84243 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
H3F3AP84243 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
H3F3AP84243 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
H3F3AP84243 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.4■□□□□ 0.38
H3F3AP84243 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
H3F3AP84243 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
H3F3AP84243 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
H3F3AP84243 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
H3F3AP84243 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
H3F3AP84243 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
H3F3AP84243 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
H3F3AP84243 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
H3F3AP84243 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.4■□□□□ 0.38
H3F3AP84243 UBE2SP1-201ENST00000450587 669 ntBASIC17.4■□□□□ 0.38
H3F3AP84243 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
H3F3AP84243 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
H3F3AP84243 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.4■□□□□ 0.38
H3F3AP84243 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
H3F3AP84243 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
H3F3AP84243 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.4■□□□□ 0.38
H3F3AP84243 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
H3F3AP84243 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
H3F3AP84243 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
H3F3AP84243 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
H3F3AP84243 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.39■□□□□ 0.38
H3F3AP84243 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
H3F3AP84243 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
H3F3AP84243 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
H3F3AP84243 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
H3F3AP84243 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
H3F3AP84243 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.39■□□□□ 0.37
H3F3AP84243 AL158047.1-201ENST00000445918 881 ntBASIC17.39■□□□□ 0.37
H3F3AP84243 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.39■□□□□ 0.37
H3F3AP84243 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.39■□□□□ 0.37
H3F3AP84243 RARRES2P10-201ENST00000564312 460 ntBASIC17.39■□□□□ 0.37
H3F3AP84243 AL353708.3-201ENST00000610272 989 ntBASIC17.39■□□□□ 0.37
H3F3AP84243 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.39■□□□□ 0.37
H3F3AP84243 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
H3F3AP84243 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
H3F3AP84243 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.39■□□□□ 0.37
H3F3AP84243 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.39■□□□□ 0.37
H3F3AP84243 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
H3F3AP84243 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
H3F3AP84243 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
H3F3AP84243 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
H3F3AP84243 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
H3F3AP84243 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
H3F3AP84243 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
H3F3AP84243 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms