Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NEK3P51956 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NEK3P51956 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.06■□□□□ 0.8
NEK3P51956 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.06■□□□□ 0.8
NEK3P51956 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NEK3P51956 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
NEK3P51956 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.06■□□□□ 0.8
NEK3P51956 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NEK3P51956 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NEK3P51956 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
NEK3P51956 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NEK3P51956 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NEK3P51956 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
NEK3P51956 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NEK3P51956 MIR718-201ENST00000390190 70 ntBASIC20.06■□□□□ 0.8
NEK3P51956 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
NEK3P51956 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
NEK3P51956 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
NEK3P51956 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.06■□□□□ 0.8
NEK3P51956 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.06■□□□□ 0.8
NEK3P51956 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.06■□□□□ 0.8
NEK3P51956 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.06■□□□□ 0.8
NEK3P51956 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
NEK3P51956 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NEK3P51956 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.06■□□□□ 0.8
NEK3P51956 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
NEK3P51956 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NEK3P51956 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
NEK3P51956 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NEK3P51956 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
NEK3P51956 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NEK3P51956 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NEK3P51956 AC093484.2-201ENST00000580996 2166 ntBASIC20.05■□□□□ 0.8
NEK3P51956 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.05■□□□□ 0.8
NEK3P51956 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
NEK3P51956 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.05■□□□□ 0.8
NEK3P51956 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.05■□□□□ 0.8
NEK3P51956 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NEK3P51956 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
NEK3P51956 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NEK3P51956 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
NEK3P51956 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.05■□□□□ 0.8
NEK3P51956 AC110285.5-201ENST00000611501 352 ntBASIC20.05■□□□□ 0.8
NEK3P51956 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.05■□□□□ 0.8
NEK3P51956 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NEK3P51956 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NEK3P51956 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
NEK3P51956 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
NEK3P51956 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
NEK3P51956 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NEK3P51956 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NEK3P51956 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.04■□□□□ 0.8
NEK3P51956 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
NEK3P51956 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
NEK3P51956 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NEK3P51956 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.04■□□□□ 0.8
NEK3P51956 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NEK3P51956 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NEK3P51956 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
NEK3P51956 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NEK3P51956 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
NEK3P51956 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NEK3P51956 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
NEK3P51956 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NEK3P51956 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NEK3P51956 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
NEK3P51956 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NEK3P51956 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NEK3P51956 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
NEK3P51956 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NEK3P51956 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.03■□□□□ 0.8
NEK3P51956 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
NEK3P51956 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
NEK3P51956 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
NEK3P51956 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.03■□□□□ 0.8
NEK3P51956 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.03■□□□□ 0.8
NEK3P51956 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NEK3P51956 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
NEK3P51956 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NEK3P51956 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NEK3P51956 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
NEK3P51956 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NEK3P51956 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NEK3P51956 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NEK3P51956 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.03■□□□□ 0.8
NEK3P51956 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
NEK3P51956 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NEK3P51956 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NEK3P51956 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.02■□□□□ 0.8
NEK3P51956 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NEK3P51956 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
NEK3P51956 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
NEK3P51956 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.02■□□□□ 0.8
NEK3P51956 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NEK3P51956 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NEK3P51956 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.02■□□□□ 0.8
NEK3P51956 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.02■□□□□ 0.8
NEK3P51956 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.02■□□□□ 0.8
NEK3P51956 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.02■□□□□ 0.8
NEK3P51956 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms