Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFC3P40938 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
RFC3P40938 AL691432.2-201ENST00000607222 2038 ntBASIC17.81■□□□□ 0.44
RFC3P40938 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.8■□□□□ 0.44
RFC3P40938 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFC3P40938 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RFC3P40938 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RFC3P40938 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
RFC3P40938 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
RFC3P40938 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.8■□□□□ 0.44
RFC3P40938 FAM210CP-201ENST00000445714 574 ntBASIC17.8■□□□□ 0.44
RFC3P40938 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.8■□□□□ 0.44
RFC3P40938 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFC3P40938 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.8■□□□□ 0.44
RFC3P40938 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RFC3P40938 MIR6786-201ENST00000616843 113 ntBASIC17.8■□□□□ 0.44
RFC3P40938 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.8■□□□□ 0.44
RFC3P40938 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RFC3P40938 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFC3P40938 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
RFC3P40938 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFC3P40938 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFC3P40938 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFC3P40938 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.8■□□□□ 0.44
RFC3P40938 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFC3P40938 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFC3P40938 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RFC3P40938 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFC3P40938 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFC3P40938 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.79■□□□□ 0.44
RFC3P40938 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFC3P40938 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFC3P40938 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.79■□□□□ 0.44
RFC3P40938 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.79■□□□□ 0.44
RFC3P40938 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.79■□□□□ 0.44
RFC3P40938 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.79■□□□□ 0.44
RFC3P40938 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFC3P40938 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RFC3P40938 AL031985.4-201ENST00000642138 673 ntBASIC17.79■□□□□ 0.44
RFC3P40938 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.79■□□□□ 0.44
RFC3P40938 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
RFC3P40938 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC17.79■□□□□ 0.44
RFC3P40938 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.79■□□□□ 0.44
RFC3P40938 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC17.79■□□□□ 0.44
RFC3P40938 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RFC3P40938 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
RFC3P40938 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RFC3P40938 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFC3P40938 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RFC3P40938 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RFC3P40938 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RFC3P40938 CD37-204ENST00000535669 1674 ntTSL 2 BASIC17.78■□□□□ 0.44
RFC3P40938 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.78■□□□□ 0.44
RFC3P40938 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
RFC3P40938 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RFC3P40938 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.78■□□□□ 0.44
RFC3P40938 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.78■□□□□ 0.44
RFC3P40938 TMEM179-206ENST00000616017 1645 ntBASIC17.78■□□□□ 0.44
RFC3P40938 LINC01006-201ENST00000333319 2292 ntBASIC17.78■□□□□ 0.44
RFC3P40938 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
RFC3P40938 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
RFC3P40938 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RFC3P40938 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RFC3P40938 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
RFC3P40938 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
RFC3P40938 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RFC3P40938 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
RFC3P40938 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RFC3P40938 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
RFC3P40938 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RFC3P40938 AC116562.2-201ENST00000507042 360 ntBASIC17.77■□□□□ 0.44
RFC3P40938 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.77■□□□□ 0.44
RFC3P40938 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.77■□□□□ 0.44
RFC3P40938 AL445675.2-201ENST00000620291 557 ntBASIC17.77■□□□□ 0.44
RFC3P40938 AC097493.4-201ENST00000641197 219 ntBASIC17.77■□□□□ 0.44
RFC3P40938 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RFC3P40938 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RFC3P40938 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
RFC3P40938 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RFC3P40938 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.77■□□□□ 0.44
RFC3P40938 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RFC3P40938 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
RFC3P40938 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.77■□□□□ 0.43
RFC3P40938 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RFC3P40938 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
RFC3P40938 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
RFC3P40938 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RFC3P40938 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RFC3P40938 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RFC3P40938 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC17.76■□□□□ 0.43
RFC3P40938 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RFC3P40938 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.76■□□□□ 0.43
RFC3P40938 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC17.76■□□□□ 0.43
RFC3P40938 AC112907.3-201ENST00000577781 2400 ntBASIC17.76■□□□□ 0.43
RFC3P40938 MIR1224-201ENST00000408193 85 ntBASIC17.76■□□□□ 0.43
RFC3P40938 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.76■□□□□ 0.43
RFC3P40938 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.76■□□□□ 0.43
RFC3P40938 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.76■□□□□ 0.43
RFC3P40938 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.76■□□□□ 0.43
RFC3P40938 AC012306.2-201ENST00000609350 630 ntBASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms