Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
BRCA1P38398 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
BRCA1P38398 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.82■■□□□ 1.4
BRCA1P38398 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
BRCA1P38398 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
BRCA1P38398 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC23.81■■□□□ 1.4
BRCA1P38398 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC23.81■■□□□ 1.4
BRCA1P38398 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC23.81■■□□□ 1.4
BRCA1P38398 AP002469.2-201ENST00000531724 424 ntBASIC23.81■■□□□ 1.4
BRCA1P38398 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC23.81■■□□□ 1.4
BRCA1P38398 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
BRCA1P38398 GALC-202ENST00000393568 2054 ntTSL 2 BASIC23.81■■□□□ 1.4
BRCA1P38398 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC23.81■■□□□ 1.4
BRCA1P38398 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
BRCA1P38398 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC23.81■■□□□ 1.4
BRCA1P38398 TSSC2-201ENST00000450217 709 ntBASIC23.81■■□□□ 1.4
BRCA1P38398 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC23.81■■□□□ 1.4
BRCA1P38398 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
BRCA1P38398 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
BRCA1P38398 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC23.81■■□□□ 1.4
BRCA1P38398 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
BRCA1P38398 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
BRCA1P38398 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
BRCA1P38398 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
BRCA1P38398 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
BRCA1P38398 MRPL3P1-201ENST00000400109 1033 ntBASIC23.8■■□□□ 1.4
BRCA1P38398 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
BRCA1P38398 MIR4674-201ENST00000582457 87 ntBASIC23.8■■□□□ 1.4
BRCA1P38398 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
BRCA1P38398 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
BRCA1P38398 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
BRCA1P38398 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
BRCA1P38398 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC23.8■■□□□ 1.4
BRCA1P38398 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
BRCA1P38398 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
BRCA1P38398 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC23.79■■□□□ 1.4
BRCA1P38398 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC23.79■■□□□ 1.4
BRCA1P38398 MPI-205ENST00000562606 1052 ntTSL 3 BASIC23.79■■□□□ 1.4
BRCA1P38398 TBCB-205ENST00000585746 875 ntTSL 3 BASIC23.79■■□□□ 1.4
BRCA1P38398 AP002414.4-201ENST00000589764 1148 ntBASIC23.79■■□□□ 1.4
BRCA1P38398 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
BRCA1P38398 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC23.79■■□□□ 1.4
BRCA1P38398 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
BRCA1P38398 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC23.79■■□□□ 1.4
BRCA1P38398 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
BRCA1P38398 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC23.79■■□□□ 1.4
BRCA1P38398 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
BRCA1P38398 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC23.79■■□□□ 1.4
BRCA1P38398 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
BRCA1P38398 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
BRCA1P38398 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
BRCA1P38398 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
BRCA1P38398 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
BRCA1P38398 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
BRCA1P38398 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC23.78■■□□□ 1.4
BRCA1P38398 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC23.78■■□□□ 1.4
BRCA1P38398 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
BRCA1P38398 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
BRCA1P38398 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
BRCA1P38398 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
BRCA1P38398 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC23.78■■□□□ 1.4
BRCA1P38398 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
BRCA1P38398 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
BRCA1P38398 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC23.77■■□□□ 1.4
BRCA1P38398 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC23.77■■□□□ 1.4
BRCA1P38398 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
BRCA1P38398 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
BRCA1P38398 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
BRCA1P38398 NME1-207ENST00000480143 964 ntTSL 2 BASIC23.77■■□□□ 1.4
BRCA1P38398 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
BRCA1P38398 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC23.77■■□□□ 1.4
BRCA1P38398 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC23.77■■□□□ 1.4
BRCA1P38398 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC23.77■■□□□ 1.4
BRCA1P38398 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
BRCA1P38398 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC23.77■■□□□ 1.4
BRCA1P38398 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
BRCA1P38398 AC036111.1-201ENST00000533973 1582 ntBASIC23.77■■□□□ 1.4
BRCA1P38398 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC23.77■■□□□ 1.4
BRCA1P38398 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC23.77■■□□□ 1.4
BRCA1P38398 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC23.77■■□□□ 1.4
BRCA1P38398 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
BRCA1P38398 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
BRCA1P38398 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
BRCA1P38398 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC23.77■■□□□ 1.4
BRCA1P38398 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC23.77■■□□□ 1.4
BRCA1P38398 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC23.77■■□□□ 1.4
BRCA1P38398 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC23.77■■□□□ 1.4
BRCA1P38398 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
BRCA1P38398 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC23.77■■□□□ 1.39
BRCA1P38398 CASK-201ENST00000378154 2494 ntTSL 5 BASIC23.76■■□□□ 1.39
BRCA1P38398 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC23.76■■□□□ 1.39
BRCA1P38398 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
BRCA1P38398 AC233723.2-201ENST00000623798 2106 ntBASIC23.76■■□□□ 1.39
BRCA1P38398 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC23.76■■□□□ 1.39
BRCA1P38398 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
BRCA1P38398 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
BRCA1P38398 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
BRCA1P38398 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC23.76■■□□□ 1.39
BRCA1P38398 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
BRCA1P38398 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms