Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLPTM1O96005 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.33■□□□□ 0.52
CLPTM1O96005 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLPTM1O96005 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.33■□□□□ 0.52
CLPTM1O96005 AC079140.4-201ENST00000507448 529 ntBASIC18.33■□□□□ 0.52
CLPTM1O96005 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLPTM1O96005 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.33■□□□□ 0.52
CLPTM1O96005 NTF6G-201ENST00000591094 616 ntBASIC18.33■□□□□ 0.52
CLPTM1O96005 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
CLPTM1O96005 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLPTM1O96005 BICD1-207ENST00000551848 1962 ntBASIC18.33■□□□□ 0.52
CLPTM1O96005 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLPTM1O96005 BX119927.1-201ENST00000636596 1552 ntBASIC18.33■□□□□ 0.52
CLPTM1O96005 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLPTM1O96005 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLPTM1O96005 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLPTM1O96005 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLPTM1O96005 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.32■□□□□ 0.52
CLPTM1O96005 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLPTM1O96005 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLPTM1O96005 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLPTM1O96005 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLPTM1O96005 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLPTM1O96005 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLPTM1O96005 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.32■□□□□ 0.52
CLPTM1O96005 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLPTM1O96005 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CLPTM1O96005 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CLPTM1O96005 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CLPTM1O96005 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLPTM1O96005 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CLPTM1O96005 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLPTM1O96005 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.32■□□□□ 0.52
CLPTM1O96005 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.32■□□□□ 0.52
CLPTM1O96005 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLPTM1O96005 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CLPTM1O96005 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLPTM1O96005 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.32■□□□□ 0.52
CLPTM1O96005 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.32■□□□□ 0.52
CLPTM1O96005 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CLPTM1O96005 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
CLPTM1O96005 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.32■□□□□ 0.52
CLPTM1O96005 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC18.32■□□□□ 0.52
CLPTM1O96005 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLPTM1O96005 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CLPTM1O96005 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
CLPTM1O96005 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CLPTM1O96005 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLPTM1O96005 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLPTM1O96005 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLPTM1O96005 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CLPTM1O96005 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLPTM1O96005 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.31■□□□□ 0.52
CLPTM1O96005 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.31■□□□□ 0.52
CLPTM1O96005 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CLPTM1O96005 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC18.31■□□□□ 0.52
CLPTM1O96005 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.31■□□□□ 0.52
CLPTM1O96005 KRT18P61-201ENST00000585825 1298 ntBASIC18.31■□□□□ 0.52
CLPTM1O96005 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.31■□□□□ 0.52
CLPTM1O96005 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLPTM1O96005 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLPTM1O96005 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLPTM1O96005 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.31■□□□□ 0.52
CLPTM1O96005 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLPTM1O96005 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
CLPTM1O96005 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.31■□□□□ 0.52
CLPTM1O96005 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLPTM1O96005 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLPTM1O96005 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLPTM1O96005 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLPTM1O96005 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.3■□□□□ 0.52
CLPTM1O96005 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLPTM1O96005 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLPTM1O96005 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLPTM1O96005 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLPTM1O96005 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.3■□□□□ 0.52
CLPTM1O96005 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CLPTM1O96005 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLPTM1O96005 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.3■□□□□ 0.52
CLPTM1O96005 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CLPTM1O96005 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.3■□□□□ 0.52
CLPTM1O96005 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.3■□□□□ 0.52
CLPTM1O96005 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CLPTM1O96005 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLPTM1O96005 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CLPTM1O96005 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
CLPTM1O96005 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLPTM1O96005 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.3■□□□□ 0.52
CLPTM1O96005 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.3■□□□□ 0.52
CLPTM1O96005 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.3■□□□□ 0.52
CLPTM1O96005 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.3■□□□□ 0.52
CLPTM1O96005 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLPTM1O96005 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLPTM1O96005 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLPTM1O96005 AC004854.2-201ENST00000608450 1441 ntBASIC18.3■□□□□ 0.52
CLPTM1O96005 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.3■□□□□ 0.52
CLPTM1O96005 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLPTM1O96005 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLPTM1O96005 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLPTM1O96005 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms