Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1BO60663 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
LMX1BO60663 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LMX1BO60663 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1BO60663 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1BO60663 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.1■□□□□ 0.33
LMX1BO60663 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
LMX1BO60663 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1BO60663 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.09■□□□□ 0.33
LMX1BO60663 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1BO60663 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.09■□□□□ 0.33
LMX1BO60663 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1BO60663 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
LMX1BO60663 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1BO60663 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1BO60663 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.09■□□□□ 0.33
LMX1BO60663 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1BO60663 RPPH1-201ENST00000516869 333 ntBASIC17.09■□□□□ 0.33
LMX1BO60663 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.09■□□□□ 0.33
LMX1BO60663 C1QBPP2-201ENST00000528754 825 ntBASIC17.09■□□□□ 0.33
LMX1BO60663 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.09■□□□□ 0.33
LMX1BO60663 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.09■□□□□ 0.33
LMX1BO60663 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC17.09■□□□□ 0.33
LMX1BO60663 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1BO60663 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1BO60663 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1BO60663 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1BO60663 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.09■□□□□ 0.33
LMX1BO60663 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.09■□□□□ 0.33
LMX1BO60663 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.09■□□□□ 0.33
LMX1BO60663 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1BO60663 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1BO60663 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.09■□□□□ 0.33
LMX1BO60663 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1BO60663 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1BO60663 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LMX1BO60663 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LMX1BO60663 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
LMX1BO60663 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LMX1BO60663 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17.08■□□□□ 0.33
LMX1BO60663 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.08■□□□□ 0.33
LMX1BO60663 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
LMX1BO60663 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.08■□□□□ 0.32
LMX1BO60663 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.08■□□□□ 0.32
LMX1BO60663 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.08■□□□□ 0.32
LMX1BO60663 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.08■□□□□ 0.32
LMX1BO60663 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.08■□□□□ 0.32
LMX1BO60663 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1BO60663 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1BO60663 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
LMX1BO60663 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1BO60663 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1BO60663 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.08■□□□□ 0.32
LMX1BO60663 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1BO60663 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.08■□□□□ 0.32
LMX1BO60663 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.08■□□□□ 0.32
LMX1BO60663 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
LMX1BO60663 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC17.08■□□□□ 0.32
LMX1BO60663 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.08■□□□□ 0.32
LMX1BO60663 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1BO60663 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1BO60663 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1BO60663 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1BO60663 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1BO60663 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
LMX1BO60663 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1BO60663 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1BO60663 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1BO60663 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1BO60663 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LMX1BO60663 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
LMX1BO60663 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1BO60663 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1BO60663 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1BO60663 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1BO60663 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1BO60663 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1BO60663 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.07■□□□□ 0.32
LMX1BO60663 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1BO60663 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.07■□□□□ 0.32
LMX1BO60663 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.07■□□□□ 0.32
LMX1BO60663 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.07■□□□□ 0.32
LMX1BO60663 PNMA6B-201ENST00000538162 1200 ntBASIC17.07■□□□□ 0.32
LMX1BO60663 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.07■□□□□ 0.32
LMX1BO60663 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.07■□□□□ 0.32
LMX1BO60663 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.07■□□□□ 0.32
LMX1BO60663 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC17.07■□□□□ 0.32
LMX1BO60663 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1BO60663 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.07■□□□□ 0.32
LMX1BO60663 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1BO60663 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1BO60663 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1BO60663 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1BO60663 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1BO60663 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
LMX1BO60663 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
LMX1BO60663 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1BO60663 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1BO60663 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.07■□□□□ 0.32
LMX1BO60663 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms